Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00525 ATGATGAATCCGGTAGTCTTTTTGTTGACCCTGGTGGCTGCTCTCCATGTGACGGCAGCCAAGGTTGTTCTGATGGGAAGCAATGTCACTCTCTCCTTCGATGATATTGAAGCGAATTTTGCTCCTTCAGTTAAAGGATCGGGAAAATGTGGGGTGTTGTATATGGCAGAGCCCCTTGATGCTTGTACAGAACTTAGAAATAATGCCAAACAGTATCCAGATGTAAGTTCCCCTTTTGTTCTAATAATCAGAGGAGGATGCAGCTTTGAGGACAAAGTTAGAAGAGCACAAAAGGCTGGGTTTGAAGCTGCAATTGTCTATGATAGTGAAGATGACGGCGCCTTGGTTGCAATGGCTGGTGACTCAAATGGCATTAAAGTTCATGCTGTATTTATTTCAAAGGCTTCAGGGGAAATGCTAAAGAAATATGTAGGATTAACTGATATGGAGGTCTGGTTACTTCCTAGTTTTGAGAATACTGCATGGTCAATTATGGCTATTTCGTTCATTTCCCTACTTGCCATGTCTGCTGTGCTGGCCACTTGTTTCTTTGTTCGTAGACATCGTATAAGAAGAGAAAGGCCTCAACCTTGCGTTCGAGAATTTCATGGGATGAGCAAACGTCTGGTGAAGGCAATGCCAAGTTTGATCTTCACTGCTGTTTCCGAGGATAACTGCACATCCTCAACTTGTGCCATTTGTCTTGAAGACTATAATGTAGGAGAAAAACTCAGAATCCTTCCTTGTCGCCACAAATTTCATGCCTTATGTGTGGACTCCTGGCTTACCTCATGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCGAGAACTGGTACAAATGATCCTCCAGCTTCAGAATCTACACCTTTGCTCTCATCCAGTCCTGGATCTTTTGCTGCTTCTATTTTGTCATCAAGATCATCGTTACTGCCATCTCCATCCATACAAATACTTCCACCATCATCACGTTCTGTTTCCCGTCCTCATTCTTTTGCTAGCACTCCTTATTTTCAACAGTCTCTAAGGTCTTATCAGCAATCTCCTCTTATTATAAGCCGAAGCTCTGTTGATCTTAGAAATGCATCTCAAAGATCTCTAGCTTCTAATTTGGCTTCTCCACCTTCATTTGGTTATCCATCTGTATCACCTTTGAACTCAAGATACATAACCCCATATGTCATGAGTCCAAGCAATGCCTCAGTTAACATTCATGGTTCTTCAAGTCATCATCAGCACCCTCTACGTTATAGTGAGTCTGCAACAACTTTTTCTCCTTTCGCTTCAGCCAATTCTCTACCAGAATGTTGA 1311 0.4256 MMNPVVFLLTLVAALHVTAAKVVLMGSNVTLSFDDIEANFAPSVKGSGKCGVLYMAEPLDACTELRNNAKQYPDVSSPFVLIIRGGCSFEDKVRRAQKAGFEAAIVYDSEDDGALVAMAGDSNGIKVHAVFISKASGEMLKKYVGLTDMEVWLLPSFENTAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQPCVREFHGMSKRLVKAMPSLIFTAVSEDNCTSSTCAICLEDYNVGEKLRILPCRHKFHALCVDSWLTSWRTFCPVCKRDARTGTNDPPASESTPLLSSSPGSFAASILSSRSSLLPSPSIQILPPSSRSVSRPHSFASTPYFQQSLRSYQQSPLIISRSSVDLRNASQRSLASNLASPPSFGYPSVSPLNSRYITPYVMSPSNASVNIHGSSSHHQHPLRYSESATTFSPFASANSLPEC* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00525 436 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 20 154 - -
Pte9g00525 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 278 IPR013083 -
Pte9g00525 436 Gene3D - 11 152 - -
Pte9g00525 436 SMART ring_2 231 272 IPR001841 -
Pte9g00525 436 Pfam Ring finger domain 230 273 IPR001841 -
Pte9g00525 436 CDD PA_C_RZF_like 17 161 IPR044744 -
Pte9g00525 436 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 156 288 - -
Pte9g00525 436 SUPERFAMILY PA domain 74 145 IPR046450 -
Pte9g00525 436 ProSiteProfiles Zinc finger RING-type profile. 231 273 IPR001841 -
Pte9g00525 436 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 191 278 - -
Pte9g00525 436 SUPERFAMILY RING/U-box 222 285 - -
Pte9g00525 436 Pfam PA domain 59 140 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00525 Pte-Chr9 6872491 6876866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00525 17 435 C3H Transcription Factor Family AT1G22670 50.233 7.91e-126 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00525 K15692 - qsa:O6P43_007998 623.239