LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte9g00489	ATGGAGAACAAGGTATGGGCTTTAGTTTTCATTATCTGGGTCCTGCTGGTTCAGCCATTGTTGCTGGTTTGTGCTAACATGGAAGGAGATGCGCTGCATAGCCTCAGGACAAACCTGCAGGATCCTAATAACGTTCTGCAAAGTTGGGATCCTACTCTTGTCAATCCCTGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCTGCATTGTCTGGTCAACTTGTCCCTCAGCTTGGCCTGCTCAAGAATTTGCAGTACTTGGAACTTTACAGCAACAACATTAGTGGCCCAATACCTAGTGACTTGGGAAATCTCACTAGCTTGGTCAGCTTGGATCTATACTTGAACAGTTTCTCTGGTCCTATTCCAGACACATTGGGAAAACTATCAAAATTGCGGTTTCTCCGGCTGAATAACAACAGTCTAACAGGTCCTATCCCTATGTCATTGACCAATATCTCATCGCTGCAAGTGTTGGATTTGTCCAACAACCGTCTATCAGGAGTGGTTCCGGATAATGGGTCCTTCTCCTTATTCACTCCCATCAGTTTTGCAAACAATGTGGGTCTCTGTGGGCCAGTTACTGCACACCCTTGCCCTGGGTCTCCTCCTTTTTCACCACCTCCTCCGTTTGTCCCACCACCACCAATATCTGCCCCAGGAGGAAGCTCAGCTACAGGAGCAATTGCTGGAGGAGTTGCTGCAGGTGCTGCTTTGTTGTTCGCTGCCCCTGCAATTGTGTTTGCATGGTGGCGTCGACGGAAACCTCAAGAGTTTTTCTTTGATGTTCCTGCTGAAGAGGATCCTGAAGTTCATCTTGGGCAGCTTAAAAGATTCTCACTAAGAGAGCTGCAAGTTGCTACAGATAGCTTCAGCAATAAAAACATTCTAGGGAGAGGAGGATTTGGTAAAGTTTACAAGGGACGTCTGGCAGATGGTACATTGGTAGCCGTGAAAAGACTAAAGGAAGAGCGAACACCTGGTGGAGAGCTTCAGTTTCAAACTGAAGTGGAGATGATCAGCATGGCAGTCCATCGGAACCTTCTCCGATTGCGAGGATTCTGTATGACCCCAACTGAGAGGCTGCTTGTTTATCCCTATATGGCTAATGGAAGTGTTGCATCATGTTTAAGAGAACGCTCTCCATCTCAACCTCCCCTTGATTGGCCAACAAGAAAGCGGATTGCTTTGGGGTCTGCTAGAGGTCTTTCCTATTTGCACGATCATTGTGACCCAAAGATTATTCATCGTGATGTGAAAGCCGCTAATATATTATTGGATGAGGAGTTTGAGGCTGTTGTTGGGGACTTTGGATTGGCAAAGCTTATGGACTACAAGGATACTCATGTTACTACTGCTGTTCGGGGCACAATTGGTCATATTGCTCCAGAGTACCTATCTACTGGGAAATCTTCTGAGAAAACCGATGTTTTTGGTTATGGTATTATGCTTCTGGAGCTGATAACTGGACAAAGAGCTTTTGATCTGGCCCGGCTTGCAAATGATGACGATGTGATGTTGCTTGATTGGGTGAAAGGTTTATTGAAAGAGAAAAAGCTGGAAATGCTTGTAGATCCTGATCTTCAGAACAATTACATTGAAGCTGAGGTAGAACAGCTAATTCAAGTTGCATTGCTGTGCACTCAAGGGTCCCCAATGGACAGGCCAAAGATGTCAGAAGTGGTAAGAATGCTTGAGGGTGATGGCTTGGCAGAGAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTTCGACAAGAAGTGGATCTTGCTCCTCATCCTAATTCCGATTGGATCGTAGACTCAACGGAAAATCTGCATGCAGTTGAATTATCGGGTCCCAGGTGA	1875	0.456	MENKVWALVFIIWVLLVQPLLLVCANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGLLKNLQYLELYSNNISGPIPSDLGNLTSLVSLDLYLNSFSGPIPDTLGKLSKLRFLRLNNNSLTGPIPMSLTNISSLQVLDLSNNRLSGVVPDNGSFSLFTPISFANNVGLCGPVTAHPCPGSPPFSPPPPFVPPPPISAPGGSSATGAIAGGVAAGAALLFAAPAIVFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERSPSQPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVDLAPHPNSDWIVDSTENLHAVELSGPR*	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte9g00489	624	ProSitePatterns	Protein kinases ATP-binding region signature.	307	329	IPR017441	GO:0005524
	Pte9g00489	624	FunFam	Somatic embryogenesis receptor kinase 1	270	377	-	-
	Pte9g00489	624	Gene3D	Transferase(Phosphotransferase) domain 1	378	595	-	-
	Pte9g00489	624	CDD	STK_BAK1_like	307	578	-	-
	Pte9g00489	624	ProSiteProfiles	Leucine-rich repeat profile.	165	186	IPR001611	GO:0005515
	Pte9g00489	624	SUPERFAMILY	Protein kinase-like (PK-like)	280	576	IPR011009	-
	Pte9g00489	624	Pfam	Protein kinase domain	302	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte9g00489	624	Gene3D	Ribonuclease Inhibitor	24	211	IPR032675	-
	Pte9g00489	624	ProSiteProfiles	Protein kinase domain profile.	301	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte9g00489	624	FunFam	Somatic embryogenesis receptor kinase 1	24	211	-	-
	Pte9g00489	624	FunFam	Somatic embryogenesis receptor-like kinase 1	378	595	-	-
	Pte9g00489	624	Gene3D	Phosphorylase Kinase; domain 1	270	377	-	-
	Pte9g00489	624	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	6	586	-	-
	Pte9g00489	624	Pfam	Leucine Rich Repeat	165	182	IPR001611	GO:0005515
	Pte9g00489	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	424	436	IPR008271	GO:0004672\|GO:0006468
	Pte9g00489	624	SMART	serkin_6	301	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte9g00489	624	Pfam	Leucine rich repeat N-terminal domain	25	65	IPR013210	-
	Pte9g00489	624	SUPERFAMILY	L domain-like	24	190	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte9g00489	Pte-Chr9	6146780	6153091	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte9g00489	8	625	Receptor kinase-like Gene Family	AT1G71830	89.694	0.0	1054

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Pte9g00489		Pkinase	2.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte9g00489	K13418		-	gmx:100789884	1097.03