Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00486 ATGGAATCTGGGAGGGATAGCAATAACTCGGAGCACATAGTGGATGTGAGGTCAGTGGTTGAAGCTGTGTCTGCTGAAGATGGTGAAGTTCCTATGTACCAAGTTGAAAGCCTCTGCATGCGTTGCGGGGAAAATGGGTTGACAAGATTATTGCTAACATTAATTCCCCATTTTAGAAAGATTTTGTTGTCAGCTTTTGAGTGTCCTCATTGTGGTGAGAAGAACAATGAAGTTCAGTTTGCCGGTGAAATCCAGCAGTGTGGTTGTTACTACCAGTTGGAGGTCCCTTCCAATGATCAAAAGATGCTGAATCGACAAGTTGTAAAATCAGAGTCTGCAACTATTAAGGTTCCTGAATTGGATTTTGAGATACCACCAGAGGCCCAGCGTGGAAGTCTTTCAACGGTGGAAGGGATATTAGTACGAGCTGCTGATGAACTGCAGGCCCTTCAAGATGAACGTAGGAAAGTTGATCCACAAACAGCCGAAGCAATAGACCAGTTCTTGCTGAAGTTGAGAGCTTGTGCCACAGGAGAAACACCCTTCACTTTTATTCTTGACGATCCTGCTGGAAACAGCTTCATTGAGAATCTGTTTGCCCCATCTGTTGATCCATCCTTGACCATCAAGTTTTATCAGCGAACTCCAGAGCAACAAGCAGCTCTTGGATACCTAGCTGACTTTTCACAATCTGGGGATGCAGGGAATGAAGCTACAATTGTGGAAGAAACAGGGGATCAAATAGGAAGCGAACCTCATGGCTCTGTTGGAGCCAGAGCCGGTCAACGTGCCATTGCACAGAGCAACAGCGCAGAAATTGCAGAAGCTTTATTTCGATATACAGCTCCTGAAGAGGTGATGACCTTCCCATCAACTTGTGGAGCTTGCGCTGCTAAGTGCGAGACACGAATGTTTCTGACTAAAATTCCATATTTTCAAGAAGTAATTGTCATGGCTTCCACATGTGATGCTTGTGGTTATCGGAACTCTGAGTTGAAACCTGGTGGCCGAATTCCGGAAAAAGGAAAAATGATTACTTTGTGCGTCAAGAATCTTAATGATCTAAGCCGTGATGTTATAAAGTCCGATACTGCGAGTGTTAAAGTACCGGAGTTGGAGTTAGAGCTTGCTAGTGGCACTCTTGGGGGCATGGTTACAACTGTTGAAGGTTTGATAACAAAAATCAGCGAAAGTATTGAGAGAGTGCACGGGTTTACCTTTGGAGACAGTCTTGATGAAAATAAGAGAAGCAAGTGGCTAGACTTCAGAGCAAGGCTAAACAAGCTTCTTAGCTTGGAGGAGCCATGGACGTTAATTCTTGACGATGCTTTGGCCAACTCTTTCATAGCACCAGCCACTGAAGACTTGAAAGACGACCTCCATCTAACATTTGAGGATTATGAAAGGTCATGGGAACAGAATGAGGAGCTGGGTCTGAATGATATGGACACAACATCTGCTGATGCAGCTTATGAGTCCGTAACTACCAGTACAAGGGAGTAA 1503 0.4458 MESGRDSNNSEHIVDVRSVVEAVSAEDGEVPMYQVESLCMRCGENGLTRLLLTLIPHFRKILLSAFECPHCGEKNNEVQFAGEIQQCGCYYQLEVPSNDQKMLNRQVVKSESATIKVPELDFEIPPEAQRGSLSTVEGILVRAADELQALQDERRKVDPQTAEAIDQFLLKLRACATGETPFTFILDDPAGNSFIENLFAPSVDPSLTIKFYQRTPEQQAALGYLADFSQSGDAGNEATIVEETGDQIGSEPHGSVGARAGQRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAAKCETRMFLTKIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKMITLCVKNLNDLSRDVIKSDTASVKVPELELELASGTLGGMVTTVEGLITKISESIERVHGFTFGDSLDENKRSKWLDFRARLNKLLSLEEPWTLILDDALANSFIAPATEDLKDDLHLTFEDYERSWEQNEELGLNDMDTTSADAAYESVTTSTRE* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00486 500 MobiDBLite consensus disorder prediction 476 500 - -
Pte9g00486 500 Coils Coil 133 153 - -
Pte9g00486 500 Pfam ZPR1 zinc-finger domain 291 449 IPR004457 GO:0008270
Pte9g00486 500 Pfam ZPR1 zinc-finger domain 37 196 IPR004457 GO:0008270
Pte9g00486 500 NCBIfam ZPR1 zinc finger domain 39 219 IPR004457 GO:0008270
Pte9g00486 500 NCBIfam ZPR1 zinc finger domain 292 483 IPR004457 GO:0008270
Pte9g00486 500 FunFam zinc finger protein ZPR1 83 224 - -
Pte9g00486 500 SMART zpr1 37 197 IPR004457 GO:0008270
Pte9g00486 500 SMART zpr1 291 451 IPR004457 GO:0008270
Pte9g00486 500 FunFam Zinc finger protein ZPR1 27 82 - -
Pte9g00486 500 FunFam Zinc finger protein ZPR1 337 479 - -
Pte9g00486 500 Gene3D ZPR1, A/B domain 337 479 IPR042451 -
Pte9g00486 500 Gene3D ZPR1, A/B domain 83 224 IPR042451 -
Pte9g00486 500 Gene3D ZPR1, zinc finger domain 281 336 IPR042452 -
Pte9g00486 500 Gene3D ZPR1, zinc finger domain 28 82 IPR042452 -
Pte9g00486 500 FunFam Zinc finger protein ZPR1 282 336 - -
Pte9g00486 500 MobiDBLite consensus disorder prediction 477 500 - -
Pte9g00486 500 PANTHER ZINC FINGER PROTEIN ZPR1 11 493 IPR040141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00486 Pte-Chr9 6115256 6122908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00486 8 497 C2H2 Transcription Factor Family AT5G22480 74.338 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00486 K06874 - mnt:21401433 815.453