Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00478 ATGACGGTGGAGGCTGATTCTTCTCCTGCGAGCCTGAGTACGGGGAAGAGTAAGGCTTGGCCTCCTGGATTTCGGTTCCATCCTACTGATGAGGAGTTGGTTCTGTTTTATCTGAAGAGGAAGGTGTGCAAGAAGAAGCTTGTGCCTGATGTCATTGCTGAAACAGATGTATACAAATGGGATCCTGAGGAATTGCCTGGTCAATCTGCTCTCCAAACTGGAGATAGACAGTGGTTCTTTTTCAGTCCAAGAGATAGGAGATATCCCAATGGAGCCCGGTCCAACCGTGCTACAAGACATGGCTATTGGAAAGCGACTGGAAAAGATCGATGCATCTCATGCAATTACAGAAATGTTGGTGTTAAAAAGACCCTAGTTTATTATAAAGGCCGAGCACCTAGTGGGGAGCGTACTGATTGGGTCATGCACGAATATACATTAGATGAAGAGGAGCTTAAGAGATGCTTGAACTTCAAGGACTATTACGCCTTGTATAAGGTTTATAAGAAAAGTGGACCTGGTCCCAAAAATGGTGAACAATATGGTGCCCCATTTAATGAGGAACAGTGGGCAGATGATGATTATAGCAATTGTGATTCCATTCCTGCTTTTGTAGAACTTTCAAGAAAGAAGGCTGGGGAGGTTACTCCTGTTGACACAGCTGTAGTGTATTGTGAAGGTCAATTGCCATTTAATGGTGGTGATATTGATGATATTGATGATATCATCAAATGTATTGTAAATGATCCTGTGTTTGATGTTCCACATATTGCCGAATACCCATATTCTCTGTCTCAGGCGGCAGAAGTAGAAATTCCTTGTTCTGAAGTTGAAGCGTCAGCAATATTCCAGTTTGATGACCCTGCCAGACAGCTAACACATGACTTCAATCTGTCAACATCCACTGCATTACCTTTGCATGAATCATCTGAGGTCACCACAGCTCTAGCAACTCACCAGGATGATGACGCTGTGTCTAAGCAATATGTGCAGCCTAGCTATGACTTTGCTGAATCAACTTCCCCTCAATTACCCAGTCATGAATCATCTGAGGTCACTTCAGCTTTTTCCACCCAACAGCGTGATCCTCCTGTTCTTGGAGAGGGTGACTTCTTGGAGATTGATGACCTCTGGAGTCCAGATGTAACACCTTCAAATGCAGATAAATCTGCAGAAAACCTGAAATTTGATGATTTTGATGGATTGGGTGAATTTGACCTCTATCATGATGCAGCTGCAATTTTTGGGGATGTGTTGTCAAATGATCAGGAACCCTATTCACCACCATATGTGAGTACATTTGATGTTAATAATGATGTCTTGAATCATGAATTCCAGATGCATCCTAACCTGGAGGTTCCTAATCAAATTGGTCATGGACTATCTATGCATCATTCTGGAAATACCTTTACTTCAGCAAATTTGATGGACGACTCTTTATCTCAACAAACATCAGGTTTGTTGAATGAATCTGGAAACTTTTCAACTCAAGCCAATCATAGTATCGATGGCAGCGGTCGTTCTAGAAGCCGTTTCTCTTCTGCTCTTTGGTCTTTTGTGGAGACTATTCCCACCAATCCTGCATCAGCCTCGGAAACCACTTTGGTGAATCGAGCTTTTGAAAGGATGTCTAGCTTCAGTAGGGTAGTCAAGCAAACAAGTGCTGCAGGTAATGACATTGCAAGTACGCGGCTAGCTCCAAGAAAAAGATCATCTTTCATTTTCTTTTCCAGCCTTGTTGCTGCTTGTGCTATCTTTTGGGTGTCAGTGGGAAACCTGAGACTGCTGGGAAAATGGAACTTCTGA 1806 0.4291 MTVEADSSPASLSTGKSKAWPPGFRFHPTDEELVLFYLKRKVCKKKLVPDVIAETDVYKWDPEELPGQSALQTGDRQWFFFSPRDRRYPNGARSNRATRHGYWKATGKDRCISCNYRNVGVKKTLVYYKGRAPSGERTDWVMHEYTLDEEELKRCLNFKDYYALYKVYKKSGPGPKNGEQYGAPFNEEQWADDDYSNCDSIPAFVELSRKKAGEVTPVDTAVVYCEGQLPFNGGDIDDIDDIIKCIVNDPVFDVPHIAEYPYSLSQAAEVEIPCSEVEASAIFQFDDPARQLTHDFNLSTSTALPLHESSEVTTALATHQDDDAVSKQYVQPSYDFAESTSPQLPSHESSEVTSAFSTQQRDPPVLGEGDFLEIDDLWSPDVTPSNADKSAENLKFDDFDGLGEFDLYHDAAAIFGDVLSNDQEPYSPPYVSTFDVNNDVLNHEFQMHPNLEVPNQIGHGLSMHHSGNTFTSANLMDDSLSQQTSGLLNESGNFSTQANHSIDGSGRSRSRFSSALWSFVETIPTNPASASETTLVNRAFERMSSFSRVVKQTSAAGNDIASTRLAPRKRSSFIFFSSLVAACAIFWVSVGNLRLLGKWNF* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00478 601 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 313 - -
Pte9g00478 601 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Pte9g00478 601 FunFam Nac domain-containing protein 86 29 173 - -
Pte9g00478 601 MobiDBLite consensus disorder prediction 336 361 - -
Pte9g00478 601 SUPERFAMILY NAC domain 18 170 IPR036093 GO:0003677|GO:0006355
Pte9g00478 601 MobiDBLite consensus disorder prediction 336 367 - -
Pte9g00478 601 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Pte9g00478 601 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00478 Pte-Chr9 6037936 6041487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00478 5 598 NAC Transcription Factor Family AT1G34190 40.545 2.97e-130 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte9g00478 NAM 7.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00478 - - qsa:O6P43_004131 547.74