Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00417 ATGGCAGATCTTGCTAACTACGGGAATGCAGACCGTAACATTGAGCAGGCTCTGATTGCGTTGAAAAAGGGGACTCAGTTGCTTAAATATGGTCGGAAGGGAAAACCTAAGTTTTGTCCTTTTAGACTCTCCAGTGATGAATCATCTTTGATCTGGATTTCAAGCAGTGGCGAAAGAGTTTTGAAGTTATCTTGTGTCTCGAGACTTATTCCTGGTCAAAGAACTGCTGTTTTCCAACGTTTTTTGCGGCCAGAGAAGGATTATTTATCTTTTTCACTAATATATAACAACGGGAAGCGCTCTCTTGATCTGATCTGTAAGGATAAAGTTGAAGCAGAAGTTTGGATTGTGGGACTCAAAGCATTGATATCCTCCGGTCAAGTTGGGCGCTCCAAAATTGACGGATTTAGTGATGGAGATCTCTATATCGATGATAAAGAGCTGACAACAAGTAGTCCAAGTGAAGGTTCAACCAGTGTTTCCCAAAGTATTAGCTCCCCTGACGCACCTGTGAGTATCGATCCAAATACCTCACCTAAGGGCTTTCGGTCTGAAAATACTGCAGATTCTGAAAGATCACATGCACCACCAGTGCTTTCAACTATGCAAGTAAAAGGATATGGTTCAGATGCTTTTCGAGTTAGTGTTTCTAGTGTTCCCAGTACTTCCAGCCATGGTTCTGGACCTGATGATTGTGATGCTCTAGGGGATGTGTACATATGGGGTGAACTTATAAGTGATAATGTCGTGAAAGTTGGGGCTGATAAGAATGCCAATGTTTGTGTTACAAGGACAGATGTGCTTCTTCCTAGGCCTTTAGAGTCAAATGTGGTTTTGGATGTTCATCACATTGCCTGTGGGGTCAGACATGCTGCACTTGTCACAAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCTGGTGGACGCCTGGGCCATGGTATTCTGAGCGATGTGATTCAACCCCGTCTAGTGGAAGCTTTGGCTGCTACAAATGTTAATTTTGTGGCCTGTGGAGAGTTCCATACATCAGCTGTGACATTTGCTGGGGAACTATATACTTGGGGAGATGGTACACATAATGCAGGGCTTCTTGGTCATGGTACTGATGTGAGTCATTGGATACCCAAGAGGATCACTGGTCCTCTTGAGGGACTTCAAGTTGCTTCAGTCACTTGTGGTCCATGGCATACAGCCTTGGTGACTTCAACAGGGCAACTCTTTACTTTTGGAGATGGAACCTTTGGTGTGTTAGGTCACGGTGATAGGGAAAATGTCTCATATCCAAGAGAAGTTGAATCTTTGTCAGGGTTGAGGACAATAGCTGTAGCATGTGGTGTATGGCATACTGCAGCTGTGGTAGAGGTTATTGTGACTCAATCAAGTTCAAGTGTTTCATCAGGTAAGTTGTTTACATGGGGGGATGGAGACAAAAATCGTCTTGGACAGGGAGATAAAGAAGCTCGTCTCAAACCCACATGTGTGCCAGCACTTATTGATTATAATTTTCATAAACTTGCATGTGGACACAGTTTGACTGTTGGCCTTACAACATCAGGTCAGGTTTTTACAATGGGCAGCACTGTCTATGGTCAGCTTGGAAATCCACAATCTGATGGAAAAGTGCCATGCTTGGTGGAGGATAAGCTTGCTCGAGAAACTGTTGAGGAGATAGCTTGTGGTGCTTATCATGTCACAGTTTTGACTTCAAAAAATGAAGTTTATACATGGGGGAAAGGTGCTAATGGAAGGTTGGGTCATGGGGACATTGAAGATCGGAAGACACCAACTCTTGTTGAAGCTTTGAAGGATAGACATGTCAGATGCATTGCATGTGGTTCAAACTACACTGCTGCAATTTGCCTTCACAAATGGGTCTCTGGTACTGAGCAGTCACAGTGCTCCGCCTGCAGACAGGCTTTTGGTTTCACTAGGAAAAGGCACAACTGTTATAATTGTGGACTTGTGCATTGCCATTCATGCAGTTCAAGAAAAGCATTAAGGGCTGCTCTAGCTCCTAATCCCAGCAAGGCATATCGTGTTTGTGATTCCTGCTGTGCCAAATTGAACAAGGTTTTAGAAGCTGGAAACAGTAACAGAAGAAATGCCATGCCACGTTTGTCTGCTGAAAACAAGGATAGATTGGACAAGCCTGAGACAAGGTTATCGAAGTCAACAGTGCCTTCAAACGTGGATTTGATAAAGCACCTAGATAATAAAGCTGTAAAACAAGGAAAGAAGGCTGATGTATTCTCTCTAGTACCGCCCTCACAAACTCCTAATTTGCTGCAGCTGAAAGATGTTGGTTTGTCTACTACTGTTGATTTGCAACGAACAGCACCAAGACCAGTTCTTACATCGTCTGCAGTAAATTCAAGATCTGTCTCTCCTTTCTCAAGAAGACCAAGTCCGCCTCGCTCTGCTACTCCAGTTCCAACAACATCAGGACTTTCCTTCTCTATAAGTATTGCTGATAGTTTAAAGAAAACCAATGAACTTTTAAATCAGGAAGTACTGAAGCTACGTGCTCAGGTTGAAGGCCTGAGACATAGATGTCAAATGCAAGAAATGGAACTTCAAAAATCCACGAAGAAAGCTCAAGAAGCTACATTGCTGGCTGCTGAGGAATCTGCAAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCTCTTACTGCCCAGCTTAAAGATTTGGCTGAGAGGATGCCTTCCGGAGCATATGATGCCGAGAGTATAAGAGCAGTTTTGCCGCCTAATGGTTTGGAAGCAAATGGCATTCACTTTCCAGACACAAATGGGGATCACCACTCTAGATCAGATTCCATCAGCAGCATGAGTTTTGCTTCAGTAAGAAAAGATCCTCCTCCCATTAATGGAATTGAGGGTCCAATGCATTTGGCAGCAAGCAATATCACTAATCTTTACCAGCAAAATCGGGCCTTCGTGTTCTCTAACGGTCCTGATGCAAATGGTGGGGGTCCACTTCAGTCAAGTGGCAGTACTGTGTCAGATATTATTGACAGGAGGGAATCTGGCACTTCCCAGGATGGAGAAAATGGAAAACAAACCAGGAATGCAGTGCTGGCTTCCGATGACAGTAATGTCGAGGCAGAATGGATAGAACAGTATGAACCTGGTGTATATATAACACTAGTTGCTTTGCGGGATGGAACCAGAGATCTCAAGCGAGTGCGCTTCAGCCGGAGAAGATTCGGGGAGCACCAAGCCGAGACGTGGTGGTCGGAGAACCGTGAGAAGGTGTATGAGAAGTACAATGTTCGTGGAACAGACAAGTCCTCGGCAAACCAGGCTGCTAGTAGATCAGACGGAGCTCACTCGCCAGTTTCCAAACCTCTGTAG 3357 0.4427 MADLANYGNADRNIEQALIALKKGTQLLKYGRKGKPKFCPFRLSSDESSLIWISSSGERVLKLSCVSRLIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIVGLKALISSGQVGRSKIDGFSDGDLYIDDKELTTSSPSEGSTSVSQSISSPDAPVSIDPNTSPKGFRSENTADSERSHAPPVLSTMQVKGYGSDAFRVSVSSVPSTSSHGSGPDDCDALGDVYIWGELISDNVVKVGADKNANVCVTRTDVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGILSDVIQPRLVEALAATNVNFVACGEFHTSAVTFAGELYTWGDGTHNAGLLGHGTDVSHWIPKRITGPLEGLQVASVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGQGDKEARLKPTCVPALIDYNFHKLACGHSLTVGLTTSGQVFTMGSTVYGQLGNPQSDGKVPCLVEDKLARETVEEIACGAYHVTVLTSKNEVYTWGKGANGRLGHGDIEDRKTPTLVEALKDRHVRCIACGSNYTAAICLHKWVSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPSKAYRVCDSCCAKLNKVLEAGNSNRRNAMPRLSAENKDRLDKPETRLSKSTVPSNVDLIKHLDNKAVKQGKKADVFSLVPPSQTPNLLQLKDVGLSTTVDLQRTAPRPVLTSSAVNSRSVSPFSRRPSPPRSATPVPTTSGLSFSISIADSLKKTNELLNQEVLKLRAQVEGLRHRCQMQEMELQKSTKKAQEATLLAAEESAKSKAAKEVIKSLTAQLKDLAERMPSGAYDAESIRAVLPPNGLEANGIHFPDTNGDHHSRSDSISSMSFASVRKDPPPINGIEGPMHLAASNITNLYQQNRAFVFSNGPDANGGGPLQSSGSTVSDIIDRRESGTSQDGENGKQTRNAVLASDDSNVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRGTDKSSANQAASRSDGAHSPVSKPL* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00417 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Pte9g00417 1118 Coils Coil 824 851 - -
Pte9g00417 1118 Gene3D - 457 634 IPR009091 -
Pte9g00417 1118 Gene3D - 230 456 IPR009091 -
Pte9g00417 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Pte9g00417 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 893 - -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 1094 1109 - -
Pte9g00417 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Pte9g00417 1118 SMART fyve_4 623 691 IPR000306 GO:0046872
Pte9g00417 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 457 - -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 785 815 - -
Pte9g00417 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Pte9g00417 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Pte9g00417 1118 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Pte9g00417 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Pte9g00417 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 697 726 - -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 1093 1118 - -
Pte9g00417 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Pte9g00417 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Pte9g00417 1118 SUPERFAMILY PH domain-like 14 123 - -
Pte9g00417 1118 CDD PH_PLC_plant-like 12 124 - -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 147 199 - -
Pte9g00417 1118 Coils Coil 880 900 - -
Pte9g00417 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 458 629 - -
Pte9g00417 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 696 IPR013083 -
Pte9g00417 1118 CDD FYVE_like_SF 633 686 - -
Pte9g00417 1118 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 147 184 - -
Pte9g00417 1118 Gene3D - 13 129 IPR011993 -
Pte9g00417 1118 Pfam Transcription factor BRX N-terminal domain 875 909 IPR027988 -
Pte9g00417 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Pte9g00417 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Pte9g00417 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Pte9g00417 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Pte9g00417 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 350 400 IPR000408 -
Pte9g00417 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 519 567 IPR000408 -
Pte9g00417 1118 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Pte9g00417 1118 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Pte9g00417 1118 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Pte9g00417 1118 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Pte9g00417 1118 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Pte9g00417 1118 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Pte9g00417 1118 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Pte9g00417 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Pte9g00417 1118 SUPERFAMILY FYVE/PHD zinc finger 624 700 IPR011011 -
Pte9g00417 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Pte9g00417 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 706 721 - -
Pte9g00417 1118 MobiDBLite consensus disorder prediction 785 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00417 Pte-Chr9 5060221 5067039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00417 884 1108 Major Intrinsic Protein MIP AT1G31880 32.174 2.75e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00417 - - qsa:O6P43_008117 1736.85