Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00414 ATGATTGAATGCGGCAAGCAACTTGTTCTGCTAGTATGTAAAATGACAAATGAGCTAGAATTTTACTGGGACGACCCGGTTCTGGTTCTTGCGGAACTTCCAGGTCTTGCAGAGATAATTATGCTCCGAGGAAGTCTGCTTATGGGTGGGATTCTAGATTCACACGATCGGTTTAGGGAGTGGAGACTTGATATTGATAACATGTCATATGAAGAGTTGCTGGAGCTAGGTGAGCGAATTGGTCATGTGAACACTGGGCTTAAAGAAGACGAAGTGTGGCGCTGCATTATGAAAGCTAAGCTTCCAAATCCAAATGATATATCATCCCACCAAGTTGATAGGAAATGCAGCATTCGCCAGGAAGATTATGAACCAGAAGATGAATTGGGGAAGCTAGTTTGTGGACATAGTTATCATATACAGTGTATAAGGAGATGGCTAGCACAGAAAAAATTGTGCCCTGTCTGTAAGGGAGAGGTTGTAGTGATGTGCCAAGGGAGAAAATGCAGTGAATCTAATTAA 522 0.4253 MIECGKQLVLLVCKMTNELEFYWDDPVLVLAELPGLAEIIMLRGSLLMGGILDSHDRFREWRLDIDNMSYEELLELGERIGHVNTGLKEDEVWRCIMKAKLPNPNDISSHQVDRKCSIRQEDYEPEDELGKLVCGHSYHIQCIRRWLAQKKLCPVCKGEVVVMCQGRKCSESN* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00414 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 38 160 IPR045191 GO:0061630
Pte9g00414 173 SUPERFAMILY RING/U-box 115 163 - -
Pte9g00414 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 163 IPR013083 -
Pte9g00414 173 SMART ring_2 116 156 IPR001841 -
Pte9g00414 173 Pfam RING-H2 zinc finger domain 108 157 IPR024766 GO:0008270
Pte9g00414 173 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00414 Pte-Chr9 5008149 5009438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00414 38 161 C3H Transcription Factor Family AT2G15530 47.619 9.67e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00414 - - qsa:O6P43_005125 209.92