LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte9g00402	ATGGCTTCCGATCTCGAGACCAAGGCCAAAGAGGCTTTCATGGATGACCACTTTCAACTTGCGGTTGACATCTATACTCAGGCCATCCATCTGGACCCCAATAACGATGCGTTTTATGCTGACCGAGCACAGGCCAATATTAAGCTCCAAAATTACACCGAGGCTATTGCTGATGCGAACAAGGCAATTGAGCTGAACCCAGCACTCGCAAAAGCTTATTTAAGGAAAGGTACGGCATGCATGAAGCTTGAGGAATATCATACTGCGAAGACTGCTTTGGAAATAGGTGCTACTTTGGCTCCAGATGAATCAAGATTCACTCAGATGATCAAAGAATGTGAAACGAAAATTGCAGAGGAAACTGTTCAAGATGTTAAGATTGATGCTGCAGAAGTAAGTGGAAATGATATTCAGCCTACGGTAAATGATCAGACGATTCAGACCAAGTCTGTGGTAGTTCCAGCTAAACCAAAATACAGGCATGAATTCTTCCAGAAACCAGAAGAGGCTGTGGTTACTATATTTGCTAAAGGCGTTCCTCGGGATTGTGTTGATGTCGATTTTGGCGAACAAACTTTGAGTATCACAATTAAAGTCTCTGGTGAGGAAGAATACCATTTTCAGCCTCGTCTGTTTGGAAAGATAGTGCCTGCCAAATGCAGATTCGAAATTCTGTCTACAAAAATTGAAATTCGCCTTGCGAAAGCAGAACCAATTCATTGGGCATCTCTCGAGTATGGCAAAGAAGTTGCAGTCCTGCAAAAAGTTAATCTGTCTGCAGCTGTAACTCAGAGACCTGCATACCCTTCATCGAAACCGAAGAGAGTAGACTGGGATAAGCTTGAAGCTCAAGTAAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGCGATGCAGCTTTGAACAAATTCTTCCGGGACATATACAAGGATGCAGATGAAGACACGAGAAGAGCTATGCAAAAATCTTTTATTGAGTCTAATGGAACAGTGCTGTCTACAAACTGGAAAGAAGTAGGATCTAAGAAGGTGGAAGGAAGTCCACCTGATGGCATGGAATTGAAGAACTGGGAATACTGA	1077	0.4271	MASDLETKAKEAFMDDHFQLAVDIYTQAIHLDPNNDAFYADRAQANIKLQNYTEAIADANKAIELNPALAKAYLRKGTACMKLEEYHTAKTALEIGATLAPDESRFTQMIKECETKIAEETVQDVKIDAAEVSGNDIQPTVNDQTIQTKSVVVPAKPKYRHEFFQKPEEAVVTIFAKGVPRDCVDVDFGEQTLSITIKVSGEEEYHFQPRLFGKIVPAKCRFEILSTKIEIRLAKAEPIHWASLEYGKEVAVLQKVNLSAAVTQRPAYPSSKPKRVDWDKLEAQVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFIESNGTVLSTNWKEVGSKKVEGSPPDGMELKNWEY*	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte9g00402	358	Gene3D	-	157	248	IPR008978	-
	Pte9g00402	358	PANTHER	PROTEIN SGT1 HOMOLOG	1	356	IPR044563	GO:0051087
	Pte9g00402	358	FunFam	Protein SGT1 homolog A	154	257	-	-
	Pte9g00402	358	FunFam	Protein SGT1 homolog	1	128	-	-
	Pte9g00402	358	SUPERFAMILY	HSP20-like chaperones	153	251	IPR008978	-
	Pte9g00402	358	Gene3D	Tetratricopeptide repeat domain	1	129	IPR011990	GO:0005515
	Pte9g00402	358	ProSiteProfiles	TPR repeat profile.	36	69	IPR019734	GO:0005515
	Pte9g00402	358	ProSiteProfiles	CS domain profile.	156	245	IPR007052	-
	Pte9g00402	358	Pfam	Tetratricopeptide repeat	39	68	IPR019734	GO:0005515
	Pte9g00402	358	Pfam	Tetratricopeptide repeat	70	101	IPR019734	GO:0005515
	Pte9g00402	358	ProSiteProfiles	SGS domain profile.	267	358	IPR007699	-
	Pte9g00402	358	Pfam	SGS domain	277	356	IPR007699	-
	Pte9g00402	358	Pfam	CS domain	160	235	IPR007052	-
	Pte9g00402	358	SMART	tpr_5	70	103	IPR019734	GO:0005515
	Pte9g00402	358	SMART	tpr_5	36	69	IPR019734	GO:0005515
	Pte9g00402	358	SMART	tpr_5	2	35	IPR019734	GO:0005515
	Pte9g00402	358	CDD	p23_CS_SGT1_like	162	245	-	-
	Pte9g00402	358	SUPERFAMILY	TPR-like	4	114	IPR011990	GO:0005515
	Pte9g00402	358	Coils	Coil	42	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte9g00402	Pte-Chr9	4800511	4804586	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte9g00402	1	101	U-box Gene Family	AT3G07370	31.429	2.47e-09	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte9g00402	K12795		-	twl:119981914	520.39