Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00392 ATGTCCAAGATAGGGACAGTCATGAAAAGGTTAGTGTGTGATTTACCATCTGAGAAGCTTTCTTCTGATTTATGGGCATGGCGTAAGTATGGACAAAAACCCATCAAGGGTTCACCATATCTCAGAAACTGGTATAGATGCAGTGGCTCAAAGGGTTGTGCAGCGAGGAAGCAAGTGGAACGAAGCACCAAGGACCCAGAACTGTTTATTGTGACATACACAGGTACCAATTCGCCACCCGAGGATGAAACCCAGAGCAGAGATATGGAAATTGAAGCTGCTGCTGCAGATAATCAAGTCCTCGACGATGTTGATGGTTTCGCCGATGTTGATGATGATGATTTCTGA 348 0.4511 MSKIGTVMKRLVCDLPSEKLSSDLWAWRKYGQKPIKGSPYLRNWYRCSGSKGCAARKQVERSTKDPELFIVTYTGTNSPPEDETQSRDMEIEAAAADNQVLDDVDGFADVDDDDF* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00392 115 Gene3D WRKY domain 6 75 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte9g00392 115 Pfam WRKY DNA -binding domain 23 76 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte9g00392 115 SUPERFAMILY WRKY DNA-binding domain 19 77 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte9g00392 115 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 17 79 IPR044810 GO:0003700
Pte9g00392 115 ProSiteProfiles WRKY domain profile. 16 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte9g00392 115 SMART WRKY_cls 21 80 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00392 Pte-Chr9 4546779 4547791 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00392 9 80 WRKY Transcription Factor Family AT5G52830 73.611 2.13e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte9g00392 WRKY 5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00392 - - pvy:116128007 122.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00648 1 8199002 8200889 Pte9g00392 9 4546779 4547791 RCT
Pte4g00901 4 40107640 40109117 Pte9g00392 9 4546779 4547791 RCT
Pte9g00392 9 4546779 4547791 Pte9g00392 9 4546779 4547791 RCT