Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00383 ATGGTTTCCAACAACCCGAACCCGCCTGAAGGGTTTTACTTGGATCCAACAGGAATGGCGGTACCTGTACTTGGGTCCTTTGCTTCAGTCACCACCGCTGCAACTGCGGCTGCTACCCCGGAGGCCACCAATTCTATGGAAGATCCCGGAAAGAAGATAAGAAAGCCTTATACAATAACCAAGTCCAGGGAGAGCTGGTCTGACCCTGAGCACGACAAGTTTCTTGAAGCCCTTCAACTGTTTGATCGTGACTGGAAAAAAATTGAAGCATTTATCGGATCAAAGACAGTTATACAGATACGCAGCCATGCACAGAAGTACTTTCTAAAAGTTCAGAAGAATGGAACAAATGAGCATCTGCCTCCCCCAAGGCCGAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTCCAAAAGCTGCTCAAGTACAGTCTTCTGGATCTTCATGTGCATTGCTTGAGCCTGTAGACACGGCGCAGCCTGGTTCCAAAAATATGCTTAAAAGCCATCTAGGTAATACAGCTTTGTCTTCTTGGACAAGCAACGATGTTCAGGGAAACAGTTTATTCCATGGAGCAAAAGGGCCAGCAACGAATAAAAGTTGCAGTAGCACTGAAAGCACTCCGAGAACATGCCAGGTTAGAGAGGCTATTGGCCAAGGGGATCATAATCAGACATCAAAAGTTCTACCTGATTTTGCTCAAGTATATGGCTTCATTGGTAATGTCTTTGACCCAAATAGTACTGGACATATACACAAACTGATGAAGATGGACCCGATAGATGTTGAGACGGTGCTACTATTGATGAGAAATTTGTCTATCAATTTAACCAGCCCAGAATTTGAGAATCATAGAAAGCTGCTTTCCAACTATGATGTGGAGCTTGAGAATAGTGCCAATGCAAACAGGGAGGAGTAA 921 0.4452 MVSNNPNPPEGFYLDPTGMAVPVLGSFASVTTAATAAATPEATNSMEDPGKKIRKPYTITKSRESWSDPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTNEHLPPPRPKRKAAHPYPQKAPKAAQVQSSGSSCALLEPVDTAQPGSKNMLKSHLGNTALSSWTSNDVQGNSLFHGAKGPATNKSCSSTESTPRTCQVREAIGQGDHNQTSKVLPDFAQVYGFIGNVFDPNSTGHIHKLMKMDPIDVETVLLLMRNLSINLTSPEFENHRKLLSNYDVELENSANANREE* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00383 306 ProSiteProfiles SANT domain profile. 61 114 IPR017884 -
Pte9g00383 306 CDD SANT 65 108 IPR001005 -
Pte9g00383 306 Gene3D - 66 113 - -
Pte9g00383 306 PANTHER SWI/SNF COMPLEX-RELATED 30 284 - -
Pte9g00383 306 MobiDBLite consensus disorder prediction 112 140 - -
Pte9g00383 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Pte9g00383 306 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Pte9g00383 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Pte9g00383 306 SMART sant 62 110 IPR001005 -
Pte9g00383 306 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Pte9g00383 306 FunFam protein REVEILLE 6 isoform X1 65 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00383 Pte-Chr9 4395032 4401267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte9g00383 Myb_DNA-binding 7.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00383 - - qsa:O6P43_004257 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00323 16 4302367 4307200 Pte9g00383 9 4395032 4401267 RCT
Pte9g00383 9 4395032 4401267 Pte9g00383 9 4395032 4401267 RCT