Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00346 ATGTCTCCAAAGCAGCCTAATTCAGGACTCTTTGTGGGACTGAATAAGGGTCACATCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCTGATCGTAAAGGAAAAACAAGCAAGAGAGTCCACTTTGTGAGAAACCTCATCAGGGAGGTTGCTGGTTTTGCACCATATGAGAAGAGAATTACTGAGCTCTTGAAGGTAGGTAAGGACAAGCGTGCTTTGAAAGTTGCAAAGAGAAAGCTCGGTACACACAAGAGAGCCAAGAGAAAGCGCGAGGAGATGTCCAATGTTCTTCGGAAGATGAGAGCTGGTGGTGGCGGAGAGAAGAAGAAGTGA 333 0.4745 MSPKQPNSGLFVGLNKGHIVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAGGGGEKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00346 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Pte9g00346 110 MobiDBLite consensus disorder prediction 79 110 - -
Pte9g00346 110 MobiDBLite consensus disorder prediction 1 38 - -
Pte9g00346 110 Gene3D 60S ribosomal protein L36 1 105 IPR038097 -
Pte9g00346 110 MobiDBLite consensus disorder prediction 87 110 - -
Pte9g00346 110 FunFam 60S ribosomal protein L36 1 106 - -
Pte9g00346 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Pte9g00346 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 106 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00346 Pte-Chr9 4154695 4156554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00346 1 111 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 81.416 9.98e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00346 K02920 - mnt:21389936 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00282 16 3772860 3774193 Pte9g00346 9 4154695 4156554 RCT
Pte9g00346 9 4154695 4156554 Pte9g00346 9 4154695 4156554 RCT