Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00330 ATGGGAAGGAGACCCTGCTGTGACAAGAAAGTAGTGAAGAAGGGGTTTTGGACTCCTGAAGAAGATCAAGTGTTGATAGAGTACGTCAACAAGCATGGCCATGGAAACTGGCGCAGCCTACCGAACCTTGCAGGTCTTCTTCGGTGTGGAAAAAGTTGTCGCCTACGTTGGGTAAATTATCTCCATCCTAATGTCAAGCGAAGCTCATTCTCTGAGGATGAAGATAAAACTATCATTCTTCTTCATAGGACACTTGGTAATAGGTGGGCAGCCATTGCATCATATCTTCCAGGAAGAACAGATAATCAAATTAAAAACTATTGGAACACAAATCTGAAGAGGCGTTTGCATAGCTTCCAGTTAAATTATGCCTTAGAGTCACACAAGCTCACCCTTGGTTACAGTGGAAGCAATGGTAAAACTGAATCCCATTCATGCTCGGACATTGTAAAAATTGAGAGCCCCAAGGTTAAGGCTGAGCCTAGTTTGTCGACTGATTCCTCTCTGTTGAATTCAATTTCGAATGAAACATACCCTGATTACTTCCTACAGCTATGGCATTCCGAGGTAGGAGAAGCATTCCGTAGAATCAGCAGAAAAGATGAACCAGCTTGTGAAAGTTCATTCTCACAAATATTGTCATCGCCAGGATTCAGTTTTGGTTCTGAAACCAGCTTCCCTGCTAAAATGAGTAGGGAGCAATGGGAGATAGCCAGAGCTGAGGCAGTGAATCTTTTGGATACTTATCCATTATCACAGAACTCGAAGGATACAAGTGAAACCTACCCTGATTACTTTCTGCAGCTGTGGCATTCTGAGGTGGGGGAAGCATTTCGTGGGATCGACAGAAAATATGCAATCGTATGTGAGAGTTCTGTCTCACAAAAATATTCATCTACAGAATTTGGGGTATATTTCGAAAACACACAAAGGACTAATACCACCTACTGTTCTAACATCAGTCAAGATCAAGCCTGCTGTATGTCTAAGGTAAAGACGGAAGAGGGCACTGAAGCTCTAGAACCGAGTTCTTTCGGGTATCTGGATGCTTCTGATTGCATGTTCAAGCTTCTGCTAGAAATCCCCGACTATGATGATATGGAATTCATACGAGCAAAGCCATCAATATTTAATAGTGCAGGCGATTGA 1149 0.4265 MGRRPCCDKKVVKKGFWTPEEDQVLIEYVNKHGHGNWRSLPNLAGLLRCGKSCRLRWVNYLHPNVKRSSFSEDEDKTIILLHRTLGNRWAAIASYLPGRTDNQIKNYWNTNLKRRLHSFQLNYALESHKLTLGYSGSNGKTESHSCSDIVKIESPKVKAEPSLSTDSSLLNSISNETYPDYFLQLWHSEVGEAFRRISRKDEPACESSFSQILSSPGFSFGSETSFPAKMSREQWEIARAEAVNLLDTYPLSQNSKDTSETYPDYFLQLWHSEVGEAFRGIDRKYAIVCESSVSQKYSSTEFGVYFENTQRTNTTYCSNISQDQACCMSKVKTEEGTEALEPSSFGYLDASDCMFKLLLEIPDYDDMEFIRAKPSIFNSAGD* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00330 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte9g00330 382 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte9g00330 382 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Pte9g00330 382 CDD SANT 69 112 IPR001005 -
Pte9g00330 382 FunFam Transcription factor RAX3 7 67 - -
Pte9g00330 382 Gene3D - 68 131 - -
Pte9g00330 382 Gene3D - 11 67 - -
Pte9g00330 382 CDD SANT 17 61 IPR001005 -
Pte9g00330 382 SMART sant 13 63 IPR001005 -
Pte9g00330 382 SMART sant 66 114 IPR001005 -
Pte9g00330 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte9g00330 382 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pte9g00330 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Pte9g00330 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte9g00330 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00330 Pte-Chr9 3987980 3989583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00330 1 202 MYB Transcription Factor Family AT3G61250 53.398 1.64e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte9g00330 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00330 K09422 - qsa:O6P43_008227 266.929