Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00328 ATGGTGTTCAAGTCATCAGACAAGCCAAAGTCAAACCATAGAAAGGGTTTGTGGTCACCTGAAGAAGACGATAAGCTCAGAAACTATATCCTCAAATATGGTCACGGCTGCTGGAGTTCTGTTCCCATTAAGGCTGGTTTGCAAAGAAATGGCAAGAGCTGCAGACTAAGGTGGATTAATTACCTCAGGCCAGGGTTAAAGAGAGGAGTCTTTAGCAAACAAGAGGAAGCTACAGTTTTGACCCTTCACCATATCCTAGGCAACAAGTGGTCTCAGATAGCTCAGCATTTACCGGGAAGAACTGATAATGAAATAAAAAACTACTGGCATTCATGTTTGAAAAAGAAAGCGGCTAAATTTGAAGAAATGGAGGCTGATACAAGATTTCAACGTACAATCTCAGGCTCAGATTCCAGGGAATCACCTTCTAGCCAAAAACTACCCGGCTACGATTCAGTGGAACACTTGGAACAGTCAGCTACAGACATCACAGATCTTGTTCCACAGAACAACAACTTCACCAAAGATGCTTCATGCCAAAGCTCCTTTCCAAAGATTCTCTTTGCTGAGTGGCATTCTCCAGGCCATGCACAATACTGGAGCGATGCAAGTTCAAGAGAATTTGGGGTTCCGAAGAATGGTTTAAATCATGATCTAAACTATGATGAAGCATTGATGAATGGTTTGTTATCAACTGAAGGAATCTATGGTGGCCAGTTGCTAACTGATCAAAACCACGGTGCAACAACTGAGATGTTTGATTCACATTTTGATCTGACAGATAAAATGGTAGGAAATGGACGCACCAGTTATTTGATCTGTGAGAGTAATTTGAGTGATGACTTTTACTTGAATAATGGTTTATTACTAATATGA 876 0.4098 MVFKSSDKPKSNHRKGLWSPEEDDKLRNYILKYGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKQEEATVLTLHHILGNKWSQIAQHLPGRTDNEIKNYWHSCLKKKAAKFEEMEADTRFQRTISGSDSRESPSSQKLPGYDSVEHLEQSATDITDLVPQNNNFTKDASCQSSFPKILFAEWHSPGHAQYWSDASSREFGVPKNGLNHDLNYDEALMNGLLSTEGIYGGQLLTDQNHGATTEMFDSHFDLTDKMVGNGRTSYLICESNLSDDFYLNNGLLLI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00328 291 CDD SANT 18 62 IPR001005 -
Pte9g00328 291 Gene3D - 15 67 - -
Pte9g00328 291 SMART sant 67 115 IPR001005 -
Pte9g00328 291 SMART sant 14 64 IPR001005 -
Pte9g00328 291 MobiDBLite consensus disorder prediction 129 148 - -
Pte9g00328 291 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pte9g00328 291 MobiDBLite consensus disorder prediction 129 150 - -
Pte9g00328 291 FunFam MYB transcription factor 12 68 - -
Pte9g00328 291 PANTHER MYB DOMAIN PROTEIN 55 6 179 - -
Pte9g00328 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pte9g00328 291 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pte9g00328 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte9g00328 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte9g00328 291 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pte9g00328 291 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pte9g00328 291 FunFam MYB transcription factor 70 141 - -
Pte9g00328 291 CDD SANT 71 110 IPR001005 -
Pte9g00328 291 Gene3D - 70 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00328 Pte-Chr9 3965646 3967552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00328 1 191 MYB Transcription Factor Family AT3G48920 51.020 8.74e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte9g00328 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00328 K09422 - qsa:O6P43_008229 326.25