Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00310 ATGGAGAAGCATGGAGAGATGGGTCTTATTGAGGAAAACTTTAATCCTAACGTCTTAGTTAGGATGATAAGTGACGAGTATGAGAACCGATCGGGTAGTGACAACTTTGAAGTTGCTTCAGGTGATGATCAGGAATGTGGCAATGATGAGCCACCCAGGAAGAAGAAATATCACAGACACACTCCTCTCCAAATTCAAGAGCTCGAAACCTTCTTCAAGGACTGCCCTCATCCTGATGAAAAACAGAGATTGGATCTTAGCAGGAGGCTTGGCTTGGAAACAAAGCAAGTCAAGTTCTGGTTTCAGAACCGGCGAACCCAGATGAAGACCCAAATCGAACGTCATGAGAATGTACTTCTCAGACAAGAAAATGAGAAGCTGCGTGCTGAAAATAGCGTGATGAAAGAGGCTTTGAACAACCCAATGTGTAACAACTGTGGGGGTCCTGCGATTCCGGTTGGAATTCCAATGGAGGATCACCATCTTAGAGTTGAGAATGGTCGGTTGAAAGAAGAATTGAGTCGTCTATTTGCTTTGTCAAACAAGTTTCTGGTCAAGCAGATTCCATTTTTGGACAATCCTCTTCGCATTCCGAATGCATCTGTTGGTTTGGAGCTTGGTGTAGGAAGAACTAGTTTGAGTGAAGATGTAAACACCAGCTCTACCTTGTCAATGCGCCTTGACGTGGGTGATGGACTTATGTCCACTTCACGAGGATTGCTGGCAATGAAGTCATCTCCATTTGGGTTGATGGGAAATGAAGTTTCAGTTGACAGATCTATGTTAATAGGGCTTGCCTTGAATGCTATGGATGAGCTAATTAAGATGGCTCAGGCTGACGGATCTCTTTGGATAAAAAATATTGATGGAACGGACGTGCTGAACCATGAGGAGTACTTGAGAAATTATGCTTCTTGTCCAGCCCTGAGATCCGGCGGTTACATCACTGAAGCTACTAGACAGAGCTGTTTAGTTATAATTAACAGTGTGGCTCTGATGGAGACTTTGATGGATGCGGGCCGATGGCAAGAAATGTTCCCAGGACTGATTGCTAGTACTGCCAGTCTTGATTTAGTGTCAAATGGCATGAATGGTTCCCCGGATGGTACTCTACAAGTGATGAATGCTGAGATTCAATTGCTTTCGCCGTTGGTTCCTGTTCGTCAATTGAAATTTCTCCGGTTCTGCAAGCAGCTTGCAGATGGTTTATGGGCTGCTGTTGATGTTTCCGTCGACATTGACGGGGATAACAAAAATAAAACCCCAAACTTAAACTGCAGAAAGCTTCCTTCTGGCTGTGTTGTGCAGGATATGCTCAATGGTTACTCAAAAGTCATTTGGATTGAGCATTCAGAGTATGATGAGAGTATCATCCCTCGGCTCTATCGGCCATTGTTTAGTTCTGGCATTGCATTTGGTGCTACTAGGTGGACGACCACTCTCCAAAGACAATGTGAATGCTTGGCACTCCTTATGTCCCCTTCTATATCTAATGATGATCACTCAGCTCTAAGCCAAGCTGGTAAGAGAAGCATGTTGAAGCTTGGCCAACGTATGACTGATAGCTTCTGTTGTGGGATTTGTCCATCAAGTGCGCGCAAGTGGGAAAAGCTCTTACTTGGAAATTTGGATGGTGACATTAGGGTGATGGCTCGTAAGAATGATGATGACCCCGGCGAGCCTCCCGGTCTTCTTTTTAGTGCTGCAACTTCTGTCTGGATGCCAGTTTCACGGCAGAAGCTGTTCAATTTTCTGAGAAACGAACAGCTCAGAAGCGAGTGGGACATTTTGTCCAATGGTGGACCAATGCATGAGATGGTCCATATTGCGAAGGGCCAAGGACGAGGAAACTGTGTCTCCCTTCTCCGGTCTAGTGTTGTGAATGCAAAAGAGAGCTCCGTGCTGATACTACAAGAGACATGGACAGATGCCTCATCCTCAGTAATAGTATATGCACCAGTTGATGTAGATTCTATAAACATCGTAATAAGTGGCGGTGATTCTGCATATGTGCCTCTCCTGCCTTCAGGATTTGCAATTCTTCCCGATGCCCGATCGGGATACAGCAATGGTGATCTAGGTGATGATGGACATGATGGTGCTGGAAGCCTGCTTACAGTTGGATTCCAGATTTTGGTGAGTAGCGCACCATCATCAAATCTCACATCTGAGTCAGTTGAAACTCTGAACAATGTCATTACCAATACAATTCAGAGGATCAAGTCAGTTTTCCATGTAGAATGA 2244 0.4488 MEKHGEMGLIEENFNPNVLVRMISDEYENRSGSDNFEVASGDDQECGNDEPPRKKKYHRHTPLQIQELETFFKDCPHPDEKQRLDLSRRLGLETKQVKFWFQNRRTQMKTQIERHENVLLRQENEKLRAENSVMKEALNNPMCNNCGGPAIPVGIPMEDHHLRVENGRLKEELSRLFALSNKFLVKQIPFLDNPLRIPNASVGLELGVGRTSLSEDVNTSSTLSMRLDVGDGLMSTSRGLLAMKSSPFGLMGNEVSVDRSMLIGLALNAMDELIKMAQADGSLWIKNIDGTDVLNHEEYLRNYASCPALRSGGYITEATRQSCLVIINSVALMETLMDAGRWQEMFPGLIASTASLDLVSNGMNGSPDGTLQVMNAEIQLLSPLVPVRQLKFLRFCKQLADGLWAAVDVSVDIDGDNKNKTPNLNCRKLPSGCVVQDMLNGYSKVIWIEHSEYDESIIPRLYRPLFSSGIAFGATRWTTTLQRQCECLALLMSPSISNDDHSALSQAGKRSMLKLGQRMTDSFCCGICPSSARKWEKLLLGNLDGDIRVMARKNDDDPGEPPGLLFSAATSVWMPVSRQKLFNFLRNEQLRSEWDILSNGGPMHEMVHIAKGQGRGNCVSLLRSSVVNAKESSVLILQETWTDASSSVIVYAPVDVDSINIVISGGDSAYVPLLPSGFAILPDARSGYSNGDLGDDGHDGAGSLLTVGFQILVSSAPSSNLTSESVETLNNVITNTIQRIKSVFHVE* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00310 747 CDD homeodomain 54 111 IPR001356 GO:0003677
Pte9g00310 747 Gene3D - 41 127 - -
Pte9g00310 747 Coils Coil 105 140 - -
Pte9g00310 747 ProSiteProfiles START domain profile. 255 490 IPR002913 GO:0008289
Pte9g00310 747 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Pte9g00310 747 SUPERFAMILY Bet v1-like 257 487 - -
Pte9g00310 747 SMART HOX_1 53 115 IPR001356 GO:0003677
Pte9g00310 747 SUPERFAMILY Bet v1-like 533 742 - -
Pte9g00310 747 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Pte9g00310 747 SMART START_1 264 487 IPR002913 GO:0008289
Pte9g00310 747 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Pte9g00310 747 FunFam Homeobox-leucine zipper protein HDG1 40 127 - -
Pte9g00310 747 CDD START_ArGLABRA2_like 259 486 - -
Pte9g00310 747 Pfam START domain 266 487 IPR002913 GO:0008289
Pte9g00310 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 744 IPR042160 -
Pte9g00310 747 SUPERFAMILY Homeodomain-like 42 111 IPR009057 -
Pte9g00310 747 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00310 Pte-Chr9 3424730 3429571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00310 1 747 Homeobox Transcription Factor Family AT3G61150 53.987 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte9g00310 START 2.2e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00310 K09338 - gmx:100794400 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00249 16 3067643 3071236 Pte9g00310 9 3424730 3429571 RCT
Pte9g00310 9 3424730 3429571 Pte9g00310 9 3424730 3429571 RCT