Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00302 ATGTTGCCCACCTCACCGAAAAGGCAGCTGATTAGATGGGCAAGGCACTCTCTTTCAATTGACATATCACGAGACACATTTATGGATTCTTGTCCTAGTCCCCAAATATTTAGCATGCAAGGGTTTGCTTTCATCTACATGGAGGACGAGAGGGATGCTGAGGATGCAATTCGTGGTCTTGACCGGATTGAATTTGGTCGGAAGGGGCGTAGACTTCGTGTTGAATGGACTAAGCAAGAACGTGGTGTTAGAAAGCCTCCTCTTTCCAGAAAATCTACTAATATGAGGCCATCAAAGACCCTATTCGTGATAAATTTCGATCCTCATCATACAAGAACAAGGGATTTGGAGAGGCACTTTGACCCTTATGGGAAGATAGTCAATGTGAGGATTAGAAGGAATTTCGCATTTGTTCAATATGACTCAGAGGATGATGCCACCAGAGCACTGGATGCTACAAACATGAGGTAG 471 0.4416 MLPTSPKRQLIRWARHSLSIDISRDTFMDSCPSPQIFSMQGFAFIYMEDERDAEDAIRGLDRIEFGRKGRRLRVEWTKQERGVRKPPLSRKSTNMRPSKTLFVINFDPHHTRTRDLERHFDPYGKIVNVRIRRNFAFVQYDSEDDATRALDATNMR* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00302 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 79 IPR000504 GO:0003723
Pte9g00302 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 156 IPR000504 GO:0003723
Pte9g00302 156 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 20 114 - -
Pte9g00302 156 SMART rrm1_1 18 75 IPR000504 GO:0003723
Pte9g00302 156 SMART rrm1_1 100 156 IPR000504 GO:0003723
Pte9g00302 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 154 IPR000504 GO:0003723
Pte9g00302 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 67 IPR000504 GO:0003723
Pte9g00302 156 Gene3D - 90 156 IPR012677 -
Pte9g00302 156 SUPERFAMILY RNA-binding domain, RBD 40 154 IPR035979 GO:0003676
Pte9g00302 156 Gene3D - 14 87 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00302 Pte-Chr9 3358883 3359642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00302 42 152 Eukaryotic Initiation Factors Gene Family AT3G16380 28.205 9.33e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00302 K12893 - aew:130791666 212.616