Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00293 ATGATGCTCGGCCCCTCTGAGCTGGAGAAGCTTTTCAAGAGATATGGCAGGGTTGATCGGGTGGATATGAAGTCTGCAGGGTTTGCTTTCATCTACATGGAGGACGAGAGGGATGCTGAGGATGCAATTCGTGGTCTTGACCGGATTGAATTTGGTCGGAAGGGGCGTAGACTTCGTGTTGAATGGACTAAGCAAGAACGTGGTGTTAGAAAGCCTCCTCTTTCCAGAAAATCTACTAATATGAGGCCATCAAAGACCCTATTCGTGATAAATTTCGATCCTCATCATACAAGAACAAGGGATTTGGAGAGGCACTTTGACCCTTATGGGAAGATAGTCAATGTGAGGATTAGAAGGAATTTCGCATTTGTTCAATATGACTCAGAGGATGATGCCACCAGAGCACTGGATGCTACAAACATGAGCAAATTGCTTGATCGAGTTATTTCTGTTGAGTTTTCTGAAAAGGATAATGATGAAAGGCGAAATGGATACAGCCCTGACAGAGGGCGTGACAGAAGGCGATCTCGAAGCCCTTACCGTAGAGAAAGAGGTAGTCCTGATTATGGCCGTGGGTCTAGTCCATCTAGAAGAGAAAGAGTCCTCGCCCCCACAGAGAGGTCTGCTTCTGAAAATGTGCATGGCAGAAGCCCGAGTCCTTTCGAGAGAGAGGCAGTAAGAGGTGACCATGGCAATAAGTATGGTGATCATAGCCCTAAAAGACAAGAGAAGGTGATCCATGAAGATGGTGTTATTTCTGCTCGCAGCCCATATGATGGGGAAAGGTCTAGTCCTGAAAACGGTGAATTAACCATGGATGGAAGTCCTTATGCAAGGGAGAATGGTTATGACGTGAGTCCTGGTTCCTTGCCTGAACAAAGGACCAGTCCCAACTTCGGCAGTCCAGATAGCCCCATGGAGGAAAGATACAACAGCCGTTCACCCCCGGCTGACGAATGA 960 0.4729 MMLGPSELEKLFKRYGRVDRVDMKSAGFAFIYMEDERDAEDAIRGLDRIEFGRKGRRLRVEWTKQERGVRKPPLSRKSTNMRPSKTLFVINFDPHHTRTRDLERHFDPYGKIVNVRIRRNFAFVQYDSEDDATRALDATNMSKLLDRVISVEFSEKDNDERRNGYSPDRGRDRRRSRSPYRRERGSPDYGRGSSPSRRERVLAPTERSASENVHGRSPSPFEREAVRGDHGNKYGDHSPKRQEKVIHEDGVISARSPYDGERSSPENGELTMDGSPYARENGYDVSPGSLPEQRTSPNFGSPDSPMEERYNSRSPPADE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00293 319 Gene3D - 72 194 IPR012677 -
Pte9g00293 319 MobiDBLite consensus disorder prediction 156 319 - -
Pte9g00293 319 MobiDBLite consensus disorder prediction 288 308 - -
Pte9g00293 319 MobiDBLite consensus disorder prediction 217 250 - -
Pte9g00293 319 MobiDBLite consensus disorder prediction 156 188 - -
Pte9g00293 319 SUPERFAMILY RNA-binding domain, RBD 75 185 IPR035979 GO:0003676
Pte9g00293 319 SMART rrm1_1 3 61 IPR000504 GO:0003723
Pte9g00293 319 SMART rrm1_1 86 152 IPR000504 GO:0003723
Pte9g00293 319 SUPERFAMILY RNA-binding domain, RBD 6 68 IPR035979 GO:0003676
Pte9g00293 319 FunFam Serine/arginine-rich splicing factor RS31 77 167 - -
Pte9g00293 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 149 IPR000504 GO:0003723
Pte9g00293 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 53 IPR000504 GO:0003723
Pte9g00293 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 65 IPR000504 GO:0003723
Pte9g00293 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 156 IPR000504 GO:0003723
Pte9g00293 319 Gene3D - 3 71 IPR012677 -
Pte9g00293 319 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00293 Pte-Chr9 3266598 3270296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00293 3 161 Eukaryotic Initiation Factors Gene Family AT1G49760 24.725 1.75e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00293 K12893 - qsa:O6P43_005551 387.497