Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00292 ATGGACAGGAGCCCTTCTCGTGCAAACGTGCCTATAAGTCGTGACTCACTCAGTATACAAGTACCTAATGAAGCTTGCTCACTCTCTTCAACCACAGGTACAGCTCCAACTGCGGCACCACCAATTCAACAGCTACAAAAGAGAGTAGGGCAAGGGGTTGAATCTCCGACTGGATCGTCATCGAGTGATCACCATCGACATGGTTCAAGGAGGAACTGGAAATACAGAGGGATAAGATGCAGAAGTGGAAAGTGGGTGTCGGAGATCAGGGAGCCACGTAAAACAACACGCATTTGGCTTGGTACGTATCCAACTCCTGAAATGGCAGCAGCTGCTTATGATGTAGCAGCTCTTGCATTGAAAGGGCCTGATGCCTCTCTCAATTTCCCTGATTCAAAATACTCCTATCCGGTACCATCCTCAACTTCTGCAAACGATATAAGAGCAGCAGCTTCCATGGCTGCTGAGGCAAGAATGCCTCATAAACTGGGAACGGTTGAGAAGCCAGAAACACAACAAGCAACAAATCATAACGCTGAAACATCATCGATTAGCAATACTCATGATCAGCAATTACAGTCCGGAGATGAATTCATAGACGAGGATGAATTGCTGAACATGCCAAATTTGCTTGTTGAAATGGCTGGTGGGATGCTTGTGAGCCCTCCTAGGATAACGTCTCCATCATCTGATGACTCGCCAGGAAGGTCAGAACGAGAAAGCCTTTGGAGCTACACATGA 741 0.471 MDRSPSRANVPISRDSLSIQVPNEACSLSSTTGTAPTAAPPIQQLQKRVGQGVESPTGSSSSDHHRHGSRRNWKYRGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFPDSKYSYPVPSSTSANDIRAAASMAAEARMPHKLGTVEKPETQQATNHNAETSSISNTHDQQLQSGDEFIDEDELLNMPNLLVEMAGGMLVSPPRITSPSSDDSPGRSERESLWSYT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00292 246 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Pte9g00292 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 60 216 - -
Pte9g00292 246 SMART rav1_2 74 136 IPR001471 GO:0003700|GO:0006355
Pte9g00292 246 Gene3D AP2/ERF domain 74 131 IPR036955 GO:0003700|GO:0006355
Pte9g00292 246 MobiDBLite consensus disorder prediction 1 73 - -
Pte9g00292 246 MobiDBLite consensus disorder prediction 166 190 - -
Pte9g00292 246 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Pte9g00292 246 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Pte9g00292 246 MobiDBLite consensus disorder prediction 220 246 - -
Pte9g00292 246 MobiDBLite consensus disorder prediction 9 41 - -
Pte9g00292 246 FunFam Ethylene-responsive transcription factor 2 74 131 - -
Pte9g00292 246 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
Pte9g00292 246 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Pte9g00292 246 MobiDBLite consensus disorder prediction 168 190 - -
Pte9g00292 246 ProSiteProfiles AP2/ERF domain profile. 74 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00292 Pte-Chr9 3240238 3242125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00292 75 245 AP2-EREBP Transcription Factor Family AT5G52020 58.621 4.78e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte9g00292 AP2 7.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00292 - - vvi:100250412 226.868