Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00286 ATGGATCTCGATGGAGGCAATAAACGGGTATTCCATCGTTTAGTTGGGCATAATGCTGATAACAGATCACAGAAGGTGTGTTATCATTGGCGAGCAGGCAAGTGCAATAGGCATCCATGTCCGTTCTTACACAAAGAATTGCCTTCTCCGGTGTTGGAAACAGCTAATGGGATGACTTCAAAGCGGCCACATGGGTTTGGTGATGATTCAGCTTATCCTAGAAGAAGTCCAAATTTTAGTGGGTCTTCGACTTGGGGACGTGTTCACAGCGGTAATGGTGTAGCTGGTGGGAATAAAATTGTTATGAAGACCGAAAAAGTTTGCAACTATTGGTCGCAAGGGAATTGTAGTTATGGGGACAGATGTAAATTCTTGCATTCTTGGAGTACAGGTGACGGTTTTTCATTACTTACACAGCTTGAGGGTCATCAGAAGGTCGTAAGTGCAATCGCTCTGCCATCTGGGTCGGACAAGCTGTATACTGGAAGTAAAGACGAGACTGTCAGGGTTTGGGGCTGCCAATCCGGGCAGTGCATGGGTGTGATTAATCTGGGAGGTGAAGTTGGTTGCATGATCAGTGAAGGTCCTTGGGTCTTTGTTGGTATGCCAAATCTTGTTAAGGCATGGAATATACAAACTTCTAGCGAACTGAGTCTCAATGGTCCTGTGGGGCAAGTGTATGCTTTGGTAGTTGGTAACGATTTGCTGTTCGGGGGGACACAGGAGGGCTCTATATTAGCATGGAAGTTTAATGCGGTAACCAACTGTTTTGAGCCAGCCGCATCACTTAAAGGTCATTCCCTTGGAGTTATTTCATTAATTGTTGGGGCTAATAGGCTTTACTCAGGTTCAATGGACCATACAATAAGAGTATGGAACCTTGAAACCTTGCAGTGTATGCAGACACTGACAGATCATACTTCTGTTGTGATGTCTCTTCTTTGCTGGGACCAATTTCTCCTGTCTTGTTCGTTGGACAAAACTATAAAGGTATGGGTTGCTACTGAAAGTGGAAACTTGGAAGTTACTTACACTCATACTGAAGATCATGGCCTGCTTGCCCTTAGTGGAATGCACGATTCACAATCTAAACCCATCTTGCTGTGCTCCTGCAATGATAACTCTGTCCGCCTATACGATTTGCCTTCATTTTTGGAGAGGGGTAAGATTTTCGCTAAACAAGAAATCCGGGCAATTCAGGTAGGTCCAGGGGGCGTATTTTTTACTGGTGATGGAACTGGTCAAGTAAAAGTATGGCAATGGGTGACTGAACCAGCTGCTTCTGCTGTCAAATAA 1296 0.4468 MDLDGGNKRVFHRLVGHNADNRSQKVCYHWRAGKCNRHPCPFLHKELPSPVLETANGMTSKRPHGFGDDSAYPRRSPNFSGSSTWGRVHSGNGVAGGNKIVMKTEKVCNYWSQGNCSYGDRCKFLHSWSTGDGFSLLTQLEGHQKVVSAIALPSGSDKLYTGSKDETVRVWGCQSGQCMGVINLGGEVGCMISEGPWVFVGMPNLVKAWNIQTSSELSLNGPVGQVYALVVGNDLLFGGTQEGSILAWKFNAVTNCFEPAASLKGHSLGVISLIVGANRLYSGSMDHTIRVWNLETLQCMQTLTDHTSVVMSLLCWDQFLLSCSLDKTIKVWVATESGNLEVTYTHTEDHGLLALSGMHDSQSKPILLCSCNDNSVRLYDLPSFLERGKIFAKQEIRAIQVGPGGVFFTGDGTGQVKVWQWVTEPAASAVK* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00286 431 ProSitePatterns Trp-Asp (WD) repeats signature. 280 294 IPR019775 -
Pte9g00286 431 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Pte9g00286 431 SMART c3hfinal6 104 128 IPR000571 GO:0046872
Pte9g00286 431 Gene3D - 7 56 - -
Pte9g00286 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 302 IPR001680 GO:0005515
Pte9g00286 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 181 IPR001680 GO:0005515
Pte9g00286 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 105 127 IPR000571 GO:0046872
Pte9g00286 431 Gene3D - 134 191 IPR015943 GO:0005515
Pte9g00286 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 296 - -
Pte9g00286 431 SMART WD40_4 256 293 IPR001680 GO:0005515
Pte9g00286 431 SMART WD40_4 337 380 IPR001680 GO:0005515
Pte9g00286 431 SMART WD40_4 383 420 IPR001680 GO:0005515
Pte9g00286 431 SMART WD40_4 133 172 IPR001680 GO:0005515
Pte9g00286 431 SMART WD40_4 212 249 IPR001680 GO:0005515
Pte9g00286 431 SMART WD40_4 296 333 IPR001680 GO:0005515
Pte9g00286 431 FunFam Zinc finger CCCH domain-containing protein 48 220 428 - -
Pte9g00286 431 Gene3D - 98 129 - -
Pte9g00286 431 Gene3D - 337 430 IPR015943 GO:0005515
Pte9g00286 431 PANTHER - 67 429 IPR044715 -
Pte9g00286 431 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Pte9g00286 431 SUPERFAMILY WD40 repeat-like 134 424 IPR036322 GO:0005515
Pte9g00286 431 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Pte9g00286 431 PRINTS G protein beta WD-40 repeat signature 159 173 IPR020472 -
Pte9g00286 431 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Pte9g00286 431 FunFam Zinc finger CCCH domain-containing protein 48 128 218 - -
Pte9g00286 431 SUPERFAMILY CCCH zinc finger 103 127 IPR036855 GO:0046872
Pte9g00286 431 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Pte9g00286 431 Gene3D - 192 336 IPR015943 GO:0005515
Pte9g00286 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 171 - -
Pte9g00286 431 Pfam WD domain, G-beta repeat 298 332 IPR001680 GO:0005515
Pte9g00286 431 Pfam WD domain, G-beta repeat 260 293 IPR001680 GO:0005515
Pte9g00286 431 Pfam WD domain, G-beta repeat 136 171 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00286 Pte-Chr9 3212457 3217810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00286 262 423 Miscellaneous Gene Families AT5G08390 29.070 6.84e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte9g00286 WD40 0.0044 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00286 - - qsa:O6P43_008277 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00286 9 3212457 3217810 Pte9g00286 9 3212457 3217810 RCT