Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00281 ATGGTGAGGGGGAAGATTCAGATGAAGAAAATCGAGAATGCAGCAAACAGACAAGTGACCTTTTCAAAGCGCCGAAATGGACTTTTGAAGAAAGCCTACGAGCTTTCAGTTCTTTGTGATGCTGAAGTAGCTGTCATTGTTTTCTCACAGAAAGGAAGGCTCTATGAATTCTCCAGTTCGGATATGCAGAAGATAATTGAGAGATACCATAAATCCACGAAAGATGTGCAGATTAGCAAAGTTGCAGATGAACAGCATGTGCAGCAATTAAGGAATGATTCTGCAATCGTGGGGAAGCAGATTGAGATGCTTGAACTCGCTCAATGGAAGCTTTTAGGGCATGGACTGCAAAACTGTTCTTATGATGAACTTCAAGAGATAGATGGACAGCTTGAAAGAAGCTTGCGAAGAATAAGGATGAGAAAGACCGAGTTATTTGCAGAAGAAATCATTCAACTAAAAGAGAAGGAAAAGGAGTTATTACAAGAGAATGCAAGATTAAAGCAGCAGATATCCACTAGCAATAATCACGCAGCAAAATGCAACGCCAATGGGCAGAGTTCAGATGTGGAGACTCAACTATTCATTGGACTGCGAGAAGCTCGTTGTTGA 612 0.4118 MVRGKIQMKKIENAANRQVTFSKRRNGLLKKAYELSVLCDAEVAVIVFSQKGRLYEFSSSDMQKIIERYHKSTKDVQISKVADEQHVQQLRNDSAIVGKQIEMLELAQWKLLGHGLQNCSYDELQEIDGQLERSLRRIRMRKTELFAEEIIQLKEKEKELLQENARLKQQISTSNNHAAKCNANGQSSDVETQLFIGLREARC* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00281 203 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte9g00281 203 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte9g00281 203 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte9g00281 203 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Pte9g00281 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte9g00281 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte9g00281 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte9g00281 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte9g00281 203 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Pte9g00281 203 Coils Coil 150 177 - -
Pte9g00281 203 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Pte9g00281 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pte9g00281 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte9g00281 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte9g00281 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00281 Pte-Chr9 3137594 3144746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00281 1 151 MADS-box Gene Family AT5G62165 62.252 2.21e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte9g00281 K-box 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00281 - - qsa:O6P43_008287 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00281 9 3137594 3144746 Pte9g00281 9 3137594 3144746 RCT