Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00260 ATGCATATGGTGGAGAAAGAGATATTTGGTTCTGGGTTTGCTGTGAAGGGTGATGAAGCCCCTCAGAGCTACCATGTAGCTCACAGGAGTGACAACGCTGTTCTGGGTGCGCCAACAGCGTTGGCTACGCCACCAGTAACAACAACTGCGCCAGCAGCGATACCACCTTCATCAGCACCTGCAGCAGCAGTGAGTGCATCCGTGACACCTGGTACAGTACAGAAGAAGAAGAGGGGGAGGCCTAGGAAGTACGCTCCCGATGGTTCTGTGGCATTAGCATTGTCTCCTATGCCCATTTCTTCATCGATTCCACTGAATGGTGAGTTTTCAGCTTGGAAACGCGGTAGGGGCCGGCCCATGGAACCAGTCAAAAAGATATTTAAATATGAGTTTGAAAGTCCAGGTGAGAGAATAGCATACTCAGTTGGTGCAAATTTCATTCCCCATGTGATTACTGTCAATGCTGGAGAGGATGTTACCATGAAAATTATGTCACTCTCTCAACAAGGATCCCGTGCTATATGCATTCTTTCTGCAAATGGGACAATTTCAAATGTTACACTTCGTCAGCCCACTACTTCTGGAGGCACTCTAACATATGAGGGTCGATTTGAGATACTCTCGTTGTCTGGATCATTTATGCCAACTGAGAATGGAATAACAAAGAGCAGATCTGGAGGGATGAGTGTCTCTTTGGCAGGCCCTGATGGTCGAGTGGTTGGTGGAAGCCTTGCTGGTCTATTGGTAGCTGCAGGTCCTGTGCAGGTTGTAGTTGCCAGTTTCCTACCAGGTCACCAGCAAGAACAGAAACCCAAGAAGCAGAGACCAGAGACAATATCAATGATGACACCTCTTATTACTACCATTTCTGCTGAAGAAGCAAATGGCGCCTTTGGTGGAATAAAACCAATTGTAACGTCTACTGCGTTCCATGCAGACAATCCATCTCCTTTTAACAATGTTCAGATATTTAGGACTTCATCTGCCGACACCAAGACATCTTTGCCTGAAGACGAATCTAAAGATCAGAGCCAATCAAACTGCGAGTGTTATCATATTACTTTCATGCCATTGGCGATGAAGATGTCAACCTAA 1095 0.463 MHMVEKEIFGSGFAVKGDEAPQSYHVAHRSDNAVLGAPTALATPPVTTTAPAAIPPSSAPAAAVSASVTPGTVQKKKRGRPRKYAPDGSVALALSPMPISSSIPLNGEFSAWKRGRGRPMEPVKKIFKYEFESPGERIAYSVGANFIPHVITVNAGEDVTMKIMSLSQQGSRAICILSANGTISNVTLRQPTTSGGTLTYEGRFEILSLSGSFMPTENGITKSRSGGMSVSLAGPDGRVVGGSLAGLLVAAGPVQVVVASFLPGHQQEQKPKKQRPETISMMTPLITTISAEEANGAFGGIKPIVTSTAFHADNPSPFNNVQIFRTSSADTKTSLPEDESKDQSQSNCECYHITFMPLAMKMST* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00260 364 CDD DUF296 148 261 IPR005175 -
Pte9g00260 364 Gene3D - 148 280 - -
Pte9g00260 364 FunFam AT-hook motif nuclear-localized protein 1-like 148 278 - -
Pte9g00260 364 ProSiteProfiles PPC domain profile profile. 143 286 IPR005175 -
Pte9g00260 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Pte9g00260 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 267 - -
Pte9g00260 364 MobiDBLite consensus disorder prediction 56 86 - -
Pte9g00260 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 325 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00260 Pte-Chr9 2946217 2951852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00260 75 298 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 61.826 1.13e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00260 - - qsa:O6P43_005480 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00190 16 2234692 2237907 Pte9g00260 9 2946217 2951852 RCT
Pte9g00260 9 2946217 2951852 Pte9g00260 9 2946217 2951852 RCT