Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00248 ATGGTAGTGAGTGGAGGAGGCAAGCCTCTGAAGCGAATGAAGCGAAGAGTTACAGCGGATCTCTATGACTTCCTTACTTTCCCTTCTTCTTCGCTTGTGTATGCGGATTTCTACGGCGGAAGCGGAGGGTCGTTTAGGACTAACGTGCGGTCGTTTTTGACAAGGCACGCACTGCTCCCACCACCATCGGCCTTGTTTCGTCACCTTTTAACGTGGCAGATCCAGTTTCGTGTAGGGGATTTAATGGATGGGTCGGATGTGAACAACCCGAAGCTAGTTTGCCTTGACGTTGTGGAAGAAGATGTTGCTAGATCTAGATCTGTCTACTGCGACCAGTGCCGAGTTGTGGGTTGGAGTGGTCACCCAGTGTGTGGGAAGCGCTACCATTTCATCATAAAGGCTGATGGTAGCTCCATTGGTGGGTACCACAAGCCATGCATGTGCTGTGGGGATATCTTGCACTTGTCCGAATTCAAATGCAAGTCATGCAATCATGTGACAACTTCAGATGATGTTGAAGACTGGGTCTATCAACAGTTGGAGAACACTTCTCATCTTTTACATGGTGTTATTCATGCCAATGGTTATGGACATCTTCTTCGGGTTAATGGGAGAGAAGGAGGCTCAAGGGTTCTATCTGGTCATCATATCATGGACTTCTGGGACCGGCTTTGTAAATTCCTGGGTGTCAGAATGGTCAGTGTGATGGATGTGTCAAAGAAATTTGGGTTGGAGTACCGCTTGCTTCACGCTGTCATGAAAGGATATCCTTGGTATGGTGACTGGGGTTACGAATTTGGCCCAGGTAGCTATTGTGTGACAATTGATGCATATAAGTCAGCTGTGGAAAACCTCTCCAATATACCTTTGTGTATAGTCCTCTCTGAGGGATCAAAACTCTACTCTCGTTTGCATGAAGTGATTTCTTACTACAAGTCCTTATCTGAGCACAAGCTTGTGTGTATTCGGGACCTCTTCTGTTTTTTGATGGGTCTGGTTCAGGTTACTAACAAGACTTCATTGAGGTTTGATGATATTACTTGCAAGAAGCAGCGAACTGAATCACTGCTCTGTTCGTGGTCTAAGAATGATATTGAACGTGTGGAGCAAGCTATCTTAAGGGTGCTGCGTGCTGTTTCCGGATCTACTTGGGTGAGTAGGCGTTCCCTCAAAGGTGCTGCCTGCAAGGTTGGCTCTCCAGAGCTCCTGGATTACTGCATCTCAGAACTTGGAGGAAAGGTGGTCAACAATGGGAAGGTTGTTAGTGTCCGACTGAATCCTGGTTCTGGTGCTGTGGAATACAGGCTTCAGGAAGGAAACAATTCTTCTAATAAAATAACAACCGTCATCAATCCACCACCTCCCAAGGAGGTTATCCTGCAAGACTTGACGTATTTATATGAATCCTTACTTCATCCTCAAACCCAGCTAACCTGTGCTTACCAAGCTCTAAGGGATATTGCTTTCAACTCAGCTGAGAAACTTCTTGACTGCAAGCAGTTTGTGAAAGACTACAGGCCTGAAAAGGTGATGGCGATGTCAAACATAAATGCCATATACGTATCATGTGAAGTGGAACTGACAGATGACTCTGAAGAATACGCCACCAACCCACCTCCAGAATTGATCATCTTGCCCTCAAATGCTACACTGTCTGATTTTAAGCTTGAAGTAACGAAGGCGTTTCATGATGTATATCTTTTGTTTAGAAGATTTCAAGTAGATGAGCTGCCAGACTTTAGTGGTGTAGATGATTCCACCCAGGTCAAGCTGGTATTAGGATCTAGGGAAGTTGTTCGAGTACGAGGCAGGTTGCTGGGAAAAAATGGGTTGAGCAGGTTCCGAATGGAGCGTGGGGTTGAGAGATGGATAGTCGATTGTAGCTGTGGAGCCAAGGATGACGATGGTGAGAGAATGTTGGCATGTGATGTTTGTGGAGTGTGGCGGCATACTAGGTGTTCTGGATTACGTGATGCAGATCCTGTACCAGCTAGGTTTGTTTGCCCAAGGTGTCGGAGCTCAGACCTGACATGTAAACCAAGTGGTCATTGCAAGGATGAGACAATGACTGAGGTGCTGTTTGGAGAAGGGTTGCCAATGCCTCCTAATGCCCGCTGA 2118 0.4636 MVVSGGGKPLKRMKRRVTADLYDFLTFPSSSLVYADFYGGSGGSFRTNVRSFLTRHALLPPPSALFRHLLTWQIQFRVGDLMDGSDVNNPKLVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSEFKCKSCNHVTTSDDVEDWVYQQLENTSHLLHGVIHANGYGHLLRVNGREGGSRVLSGHHIMDFWDRLCKFLGVRMVSVMDVSKKFGLEYRLLHAVMKGYPWYGDWGYEFGPGSYCVTIDAYKSAVENLSNIPLCIVLSEGSKLYSRLHEVISYYKSLSEHKLVCIRDLFCFLMGLVQVTNKTSLRFDDITCKKQRTESLLCSWSKNDIERVEQAILRVLRAVSGSTWVSRRSLKGAACKVGSPELLDYCISELGGKVVNNGKVVSVRLNPGSGAVEYRLQEGNNSSNKITTVINPPPPKEVILQDLTYLYESLLHPQTQLTCAYQALRDIAFNSAEKLLDCKQFVKDYRPEKVMAMSNINAIYVSCEVELTDDSEEYATNPPPELIILPSNATLSDFKLEVTKAFHDVYLLFRRFQVDELPDFSGVDDSTQVKLVLGSREVVRVRGRLLGKNGLSRFRMERGVERWIVDCSCGAKDDDGERMLACDVCGVWRHTRCSGLRDADPVPARFVCPRCRSSDLTCKPSGHCKDETMTEVLFGEGLPMPPNAR* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00248 705 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 685 - -
Pte9g00248 705 CDD PHD_MMD1_like 626 671 - -
Pte9g00248 705 SMART PHD_3 626 672 IPR001965 -
Pte9g00248 705 SUPERFAMILY FYVE/PHD zinc finger 616 674 IPR011011 -
Pte9g00248 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 677 IPR013083 -
Pte9g00248 705 Pfam PHD-finger 627 673 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00248 Pte-Chr9 2809212 2814086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00248 89 671 PHD Transcription Factor Family AT5G22260 30.435 6.71e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte9g00248 PHD 1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00248 K26271 - qsa:O6P43_008318 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00248 9 2809212 2814086 Pte9g00248 9 2809212 2814086 RCT