Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00246 ATGCATAATGCAATCAAAGAATTGGATCCATCATTCTCAGCTAAGCACACTTCTGAAGCAGACTTGCAAAATATTCAATCGGCCATTGAACTGGTTTCCAAGACACCAAATGCCCTTCTGCATTGTCAGGAGCTAAGAAGACGTTGTAACAAAGTGGTAAAGTACATGGAATGCCTTAAGAACCATGCAGCAGCAATTGGGGGGAATGCAACTGATGGCTGTGGGGAATTCATGTCTAGTGGAGAGGATGGCACTGTTGAAGCTCTCAAATGCTCAGCTTGCAATTGCCACAGGAACTTTCACAGGAAAGAGATAGAATCTGATTGCTCCTTTTGTTGCTTCTACCCCTTAGCACCCAACGGCACTGCTCAGAAAAAAACATTTATAAAACATCATCGTAGCTCACACCAGCTGCCACTTCAGGGTTCATCTTGTCAGACACTATCACCGACCAAATGTGGTTCTATTTCTTCGGAACCCGACGAAAAGGATCTAGAAGATGATAGAGAAGCTAGAGTACATGTTGATTCAGTTGAGAAGGTAAGGAAGAGGTTCAGGACTAAATTCACTCAAAAGCAGAAGGAAAAGATGCTGAGCTTTGCACAAAAGGCGGGATGGAAAATACAGAAGCTGGATGAGAAAATAATACAAGAATTTTGCCAAGAGAGTGGGATCGAGAGAAGAGTTCTCAAGGTGTGGATGCATAACAACAAACACGCATTTGCCAAGGGAAACACTACTGCAAACTAG 750 0.4307 MHNAIKELDPSFSAKHTSEADLQNIQSAIELVSKTPNALLHCQELRRRCNKVVKYMECLKNHAAAIGGNATDGCGEFMSSGEDGTVEALKCSACNCHRNFHRKEIESDCSFCCFYPLAPNGTAQKKTFIKHHRSSHQLPLQGSSCQTLSPTKCGSISSEPDEKDLEDDREARVHVDSVEKVRKRFRTKFTQKQKEKMLSFAQKAGWKIQKLDEKIIQEFCQESGIERRVLKVWMHNNKHAFAKGNTTAN* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00246 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 240 - -
Pte9g00246 249 MobiDBLite consensus disorder prediction 140 170 - -
Pte9g00246 249 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Pte9g00246 249 FunFam Zinc-finger homeodomain protein 2 169 243 - -
Pte9g00246 249 MobiDBLite consensus disorder prediction 140 156 - -
Pte9g00246 249 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Pte9g00246 249 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Pte9g00246 249 SUPERFAMILY Homeodomain-like 179 243 IPR009057 -
Pte9g00246 249 Gene3D - 169 243 - -
Pte9g00246 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00246 Pte-Chr9 2797415 2798624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00246 52 246 ZF-HD Transcription Factor Family AT1G14440 51.010 3.36e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte9g00246 ZF-HD_dimer 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00246 - - mesc:122721574 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00246 9 2797415 2798624 Pte9g00246 9 2797415 2798624 RCT