Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00239 ATGGATCAAGAAAACAATGTCGACCACGGTGATCACGAGCGAGATATCGAGAATGAGGGTAGTTTGGTTGAACGGGAGGTTGAAAGGTTTTGGTCAGAGATCTCTGACAAAAACACCTATTCACAGCCATTGCTGGTAAAGAGAGTTAACACAACTTCCCAGATTGCAATAGTTGGGTCCAACACTTACCCCATTGAAAGCCTCGACTATGAGATTGTTGAAAATGAACTATTTAAGCAAGACTGGAGGTCAAGGAAGAAAGTTCAAATATTGCAATATGTCACACTCAAGTGGGTATTTGCTCTTCTCATAGGGTTAGCTACCGGACTTGTAGGTGTTTTCAATAATATGGCAGTTGAGAACATAGCAGGCTTCAAGATGCTCCTTACAACTGAACTTATGTCTAAGCAGGAATATATGAAGGCATTTATGGCATATGCCGGTTGGAATGTATGTTTGGCGGCGGCGGCGGCAGCTCTTTGTGCTTTTTTTGCTCCTGCAGCAGCAGGTTCTGGTATCCCTGAGGTGAAAGCCTATCTCAATGGGGTAGATGCTCACTCTATTCTTGCTCCAAGCACTCTTCTTGTAAAGATTTTTGGTTCCATTCTTGGAGTATCTGCTGGATTTGTGGTTGGAAAAGAGGGGCCTATGGTACACACAGGTGCTTGCATAGCTTCTTTATTGGGCCAAGGGGGTTCGCGCAAGTATGGCTTGACATGGACATGGCTTAGACATTTTAAAAATGACCGAGACAGGCGAGACATGATCACTTGTGGTGCAGCTGCAGGGGTTGCTGCCGCCTTCCGTGCTCCAGTTGGCGGAGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGCGCCCTCCTTTGGAGAACATTTTTCACAACAGCTGTAGTTGCCATTGTCTTGAGAGCTTTTATGCAATTCTGTTCAACTGCAAGATGTGGCCGTTTTGGACGAGGAGGTCTCATTATGTTTGATGTCAGTGCAGCCTCGGTCGTATACAGTGGTTCAGATATTCTAGCAGTGTTAATTCTAGGGATTATTGGAGGCATTCTTGGAAGCATATACAACTACCTTGTGAATAAGATCCTCCGTACTTACAGCATCATCAACGAGAAAGGTGCAGTTTACAAAATATTACTTGTAGTGGCCATCTCTCTATTGACCTCAAGTTGTGCCTACGGTCTACCATGGTTTTCAAAGTGCACTCCTTGTCCCAGTGATCTCAAAGTGAGCTGTCCTGCTATTGGTGAATCTGGAAACTACAAAGCTTTCCAATGTCCACCAGACTACTACAACGATCTTGCTTCCCTCTTCCTAAACACCAATGATGACGCCATCCGCAATTTATTCAGCACTAGTACAACAAAAGAATATTACATATCCAGTCTATTCATCTTCTTTGCTGCAACGTTTTTCCTTGGAGTAATTACTTATGGCATTGCTATCCCATCTGGTCTTTTCATCCCTGTGATACTTGCTGGGGCTTGTTATGGCCGTCTAGTTGGGAGAATGTTCGAGTCAGTCTCAAAACTTGACACAGGTCTCTTTGCCCTTCTTGGAGCAGCCTCCTTTCTCGGTGGTACTATGAGAATGACAGTTTCCCTGTGTGTCATATTACTTGAGCTGACTAATGATTTGTTGTTACTTCCATTAGTGATGTTAGTACTCCTTATCTCGAAAACTGCTGCTGATATTTTCAACAAAGGTGTTTATGACCAAATATTGGTCATAAAAGGCTTACCTTATATGGAATCCCATGCAGAACCTTACATGAGGAACTTGAGTGCAAATGACGTTGTCTCCGGTCCATTGATAACCTTTTCTGGTGTGGAAAGTGTTGGAAACATATTACATGCTTTGAGGACTACAGGGCACAATGGATTCCCTGTGATTGATGAACCACCTTTCTCAGAAGCGCCCGAACTGTGTGGACTTGTATTGAGGTCTCACTTGCTTATTTTGCTGAAGAACAAGTGTTTCTCAAGAGAAAGGGTGCTTGCTGGCCAAGACATCTTGAGAAAATTTCGTGCTTTTGATTTTGCAAAGGCAGGGTCAGGCAAAGGGATTAAACTGCAGGATCTTGATATGAAAGATGAAGAGATGGATATGTATATTGACCTTCATCCTATCACTAATACATCCCCATACACTGTGGTTGAGACTATGTCACTTGCCAAAGCTTTTCTTCTCTTTCGCCAACTAGGTCTTAGACACATGTGCGTTGTCCCAAAAAGCCAAGGGAGACCTCCCATTGTCGGGATTCTTACAAGACATGATTTCATGCCGGAGCATATCCTAGGACTGTTCCCTCACATGAAGCATCACCGGTGGACAAAGTCATCCAATTGA 2361 0.4396 MDQENNVDHGDHERDIENEGSLVEREVERFWSEISDKNTYSQPLLVKRVNTTSQIAIVGSNTYPIESLDYEIVENELFKQDWRSRKKVQILQYVTLKWVFALLIGLATGLVGVFNNMAVENIAGFKMLLTTELMSKQEYMKAFMAYAGWNVCLAAAAAALCAFFAPAAAGSGIPEVKAYLNGVDAHSILAPSTLLVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYGLTWTWLRHFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAFMQFCSTARCGRFGRGGLIMFDVSAASVVYSGSDILAVLILGIIGGILGSIYNYLVNKILRTYSIINEKGAVYKILLVVAISLLTSSCAYGLPWFSKCTPCPSDLKVSCPAIGESGNYKAFQCPPDYYNDLASLFLNTNDDAIRNLFSTSTTKEYYISSLFIFFAATFFLGVITYGIAIPSGLFIPVILAGACYGRLVGRMFESVSKLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTAADIFNKGVYDQILVIKGLPYMESHAEPYMRNLSANDVVSGPLITFSGVESVGNILHALRTTGHNGFPVIDEPPFSEAPELCGLVLRSHLLILLKNKCFSRERVLAGQDILRKFRAFDFAKAGSGKGIKLQDLDMKDEEMDMYIDLHPITNTSPYTVVETMSLAKAFLLFRQLGLRHMCVVPKSQGRPPIVGILTRHDFMPEHILGLFPHMKHHRWTKSSN* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00239 786 ProSiteProfiles CBS domain profile. 714 775 IPR000644 -
Pte9g00239 786 PRINTS Plant CLC chloride channel signature 282 290 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte9g00239 786 PRINTS Plant CLC chloride channel signature 296 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte9g00239 786 PRINTS Plant CLC chloride channel signature 438 454 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte9g00239 786 PRINTS Plant CLC chloride channel signature 314 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte9g00239 786 PRINTS Plant CLC chloride channel signature 71 79 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte9g00239 786 PRINTS Chloride channel signature 486 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 PRINTS Chloride channel signature 166 183 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 PRINTS Chloride channel signature 574 588 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 PRINTS Chloride channel signature 261 280 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 PRINTS Chloride channel signature 518 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 PRINTS Chloride channel signature 536 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 PRINTS Chloride channel signature 197 216 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 CDD CBS_pair_voltage-gated_CLC_euk_bac 590 767 - -
Pte9g00239 786 Pfam CBS domain 716 764 IPR000644 -
Pte9g00239 786 SUPERFAMILY Clc chloride channel 75 589 IPR014743 -
Pte9g00239 786 SMART cbs_1 607 660 IPR000644 -
Pte9g00239 786 SMART cbs_1 718 769 IPR000644 -
Pte9g00239 786 FunFam Chloride channel ClC3 89 406 - -
Pte9g00239 786 Gene3D - 588 766 IPR046342 -
Pte9g00239 786 SUPERFAMILY CBS-domain pair 590 765 IPR046342 -
Pte9g00239 786 Gene3D Clc chloride channel 89 587 - -
Pte9g00239 786 Pfam Voltage gated chloride channel 154 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte9g00239 786 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 33 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00239 Pte-Chr9 2714295 2721297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00239 1 776 Ion Channels AT5G49890 72.308 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00239 K05016 - jre:108982434 1225.69