Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00225 ATGAACGGGAAGGCGTCTGTATCTAAGGAGCTTAATGCCAGGCATGCTAAGATTCTTGAGGGACTTCTTAGGCTGCCGGAAAACACGAAGTGTGCTGATTGTGGAACCAAGGCTCCAAGATGGGCAAGTGTCAATCTTGGAATTTTTATATGCATGCAATGTTCAGGAATCCACAGAAGTCTCGGAGTACATATATCAAAGGTGCGCTCCACTACGCTGGATACATGGCTCCCAGAGCAAGTTGCTTTTATGCATGCTATAGGTAATCAAAAGTCGAACCAATACTGGGAAGAAAAACTGCCCCAGGATTTTGACAGAAATGGATTTCACATCGAAAAGTTCATACGATCCAAGTATGTTGAAAAAAGATGGGTTCCCAATTGTGCAGTACAACCAGCTCCAACTTTAGGTGAATTGAATCACATACAAAATAAATTCTCAGATGCAGTACCTAAGTGTGGCATTCCAAGAGGTACAAGAAGACTTTCTTTAGACGAAGATATCCTTACACAGCATGTAGCAGAAGCTTTGAATCCATCAAGAACCCGTGGGGCTTCTTTAGATCTGGGTCATCTTACAACCGAAGCTGGTCAGCATTTGCATGGTCCTCCTCTTTTAGATTTCCGTACTTCCCAAAAAAATATCAATGGCGGCACAGACGTCTTAAACTTGCATCCTGCTCGCGAGAAGAAACCAGATTGTTCAATTGCGCCCCCGACACGCTGGGAAACTTTTGACTGTAAGGCTTACATGACAAAAGTGATGATAGTATAA 774 0.4315 MNGKASVSKELNARHAKILEGLLRLPENTKCADCGTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMHAIGNQKSNQYWEEKLPQDFDRNGFHIEKFIRSKYVEKRWVPNCAVQPAPTLGELNHIQNKFSDAVPKCGIPRGTRRLSLDEDILTQHVAEALNPSRTRGASLDLGHLTTEAGQHLHGPPLLDFRTSQKNINGGTDVLNLHPAREKKPDCSIAPPTRWETFDCKAYMTKVMIV* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00225 257 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Pte9g00225 257 SMART arf_gap_3 17 132 IPR001164 GO:0005096
Pte9g00225 257 SUPERFAMILY ArfGap/RecO-like zinc finger 15 127 IPR037278 -
Pte9g00225 257 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Pte9g00225 257 CDD ArfGap 19 119 - -
Pte9g00225 257 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 179 IPR044520 GO:0005096
Pte9g00225 257 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Pte9g00225 257 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pte9g00225 257 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pte9g00225 257 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Pte9g00225 257 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00225 Pte-Chr9 2563803 2567036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00225 19 119 C2H2 Transcription Factor Family AT4G05330 47.664 7.99e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00225 K12486 - cit:102607418 283.108