Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte9g00215 | ATGTCTTCTGCCGGTGGAAATTCCGGCGGCGAGGGAGGAGGCGGTGGATCCGCCGCCACATCAGCCATGCCTCAAATGTACTTTTGTCACCAGTGTAATTGCACCGTCTCGATTACACCCTCATCTACCTCATCAGACCTCACCTGCCCTAATTGCGATGGTGGATTCATCGAAGAAGTTGAAAACCCTGTTCCTACTGCCAACCCCTACGGTGACTCCAGTCCTTTCGTCTCGTTTAGCTCTGAGTTAGGCGGCCTCGGTATGGGTCATCCGCCTTTTGTTTTCTCCACCTCATCGACTGCGGGTAACGGTGGACATGGGGGATTTGACGATCTCTCTGCGCTTCTCGGTGGTATTGGCCAGAATAGATCGTCTCAGTTTCAAGACTCTGATGCGTTCAACCCCTTTCTTTTCCTTCAGAACTATTTGCAAACCCTAAGAGCGGGTGGTGGCAATGTTCAATTCGTGATTGAGAATTCGGGTGACCCAGCTGGTACTCTTCGGCTTCCAGCTAATCTTAATTTAGGGGATTACTTCATTGGACCGGGACTTGAGCAATTGATTCAGCAGCTGGCTGAGAACGATCCTAACCGATACGGTACGCCACCAGCTTCAAAGTCAGCGGTGGAAGGATTGCCTACGATACAGATTTCAAAGGAAATGATGGCTTCAGACTCTTCACAGTGTGCTGTTTGCAAAGATTCTTTTGAGCTTGAGGAAGAAGCGAAGCAATTACCTTGTAAGCATATTTACCATTCGGAATGTATTCTGCCTTGGCTGCGACAACACAATTCTTGTCCTGTTTGTCGTTATGAGTTGCCAACAGATGACCCTGATTACGAACAGAGGCGCGGGAATCCCGTTGATACGAATAGGTATCGATCTGCTGGAGCGTCTTCTGAAGGTGGAAATGGAGCAGGTTCAGGTGATAATTCGCTCACACCTAGGACAGTTGAACGTAGGTTTAGGGTACAATTGCCATGGCCTTTCAGGGTTTTTGGCTCACCTGCTGAGACAAGCAATAGTGGAACTGGTAACAACGGAAACGATGGTAGTGGCGAACACAACACAGAGAATAGAGGGAATCAAAACTCACAGTCAGAGCCAAGACAAGAAGATCTTGATTAG | 1128 | 0.4858 | MSSAGGNSGGEGGGGGSAATSAMPQMYFCHQCNCTVSITPSSTSSDLTCPNCDGGFIEEVENPVPTANPYGDSSPFVSFSSELGGLGMGHPPFVFSTSSTAGNGGHGGFDDLSALLGGIGQNRSSQFQDSDAFNPFLFLQNYLQTLRAGGGNVQFVIENSGDPAGTLRLPANLNLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAVEGLPTIQISKEMMASDSSQCAVCKDSFELEEEAKQLPCKHIYHSECILPWLRQHNSCPVCRYELPTDDPDYEQRRGNPVDTNRYRSAGASSEGGNGAGSGDNSLTPRTVERRFRVQLPWPFRVFGSPAETSNSGTGNNGNDGSGEHNTENRGNQNSQSEPRQEDLD* | 376 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte9g00215 | 375 | ProSiteProfiles | Zinc finger RING-type profile. | 229 | 270 | IPR001841 | - | |
Pte9g00215 | 375 | MobiDBLite | consensus disorder prediction | 274 | 288 | - | - | |
Pte9g00215 | 375 | FunFam | E3 ubiquitin-protein ligase RING1-like | 190 | 276 | - | - | |
Pte9g00215 | 375 | Pfam | zinc-ribbon | 25 | 59 | IPR039525 | GO:0061630 | |
Pte9g00215 | 375 | MobiDBLite | consensus disorder prediction | 292 | 315 | - | - | |
Pte9g00215 | 375 | SUPERFAMILY | RING/U-box | 210 | 276 | - | - | |
Pte9g00215 | 375 | CDD | RING-H2_RNF126-like | 228 | 270 | - | - | |
Pte9g00215 | 375 | MobiDBLite | consensus disorder prediction | 271 | 316 | - | - | |
Pte9g00215 | 375 | MobiDBLite | consensus disorder prediction | 329 | 375 | - | - | |
Pte9g00215 | 375 | Pfam | Ring finger domain | 228 | 270 | IPR001841 | - | |
Pte9g00215 | 375 | SMART | ring_2 | 229 | 269 | IPR001841 | - | |
Pte9g00215 | 375 | MobiDBLite | consensus disorder prediction | 335 | 369 | - | - | |
Pte9g00215 | 375 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 276 | IPR013083 | - | |
Pte9g00215 | 375 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 122 | 274 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte9g00215 | Pte-Chr9 | 2479991 | 2484263 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte9g00215 | 170 | 288 | C3H Transcription Factor Family | AT5G01980 | 50.420 | 4.48e-36 | 135 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte9g00215 | K11982 | - | qsa:O6P43_005293 | 472.626 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte9g00215 | 9 | 2479991 | 2484263 | Pte9g00215 | 9 | 2479991 | 2484263 | RCT |