Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00215 ATGTCTTCTGCCGGTGGAAATTCCGGCGGCGAGGGAGGAGGCGGTGGATCCGCCGCCACATCAGCCATGCCTCAAATGTACTTTTGTCACCAGTGTAATTGCACCGTCTCGATTACACCCTCATCTACCTCATCAGACCTCACCTGCCCTAATTGCGATGGTGGATTCATCGAAGAAGTTGAAAACCCTGTTCCTACTGCCAACCCCTACGGTGACTCCAGTCCTTTCGTCTCGTTTAGCTCTGAGTTAGGCGGCCTCGGTATGGGTCATCCGCCTTTTGTTTTCTCCACCTCATCGACTGCGGGTAACGGTGGACATGGGGGATTTGACGATCTCTCTGCGCTTCTCGGTGGTATTGGCCAGAATAGATCGTCTCAGTTTCAAGACTCTGATGCGTTCAACCCCTTTCTTTTCCTTCAGAACTATTTGCAAACCCTAAGAGCGGGTGGTGGCAATGTTCAATTCGTGATTGAGAATTCGGGTGACCCAGCTGGTACTCTTCGGCTTCCAGCTAATCTTAATTTAGGGGATTACTTCATTGGACCGGGACTTGAGCAATTGATTCAGCAGCTGGCTGAGAACGATCCTAACCGATACGGTACGCCACCAGCTTCAAAGTCAGCGGTGGAAGGATTGCCTACGATACAGATTTCAAAGGAAATGATGGCTTCAGACTCTTCACAGTGTGCTGTTTGCAAAGATTCTTTTGAGCTTGAGGAAGAAGCGAAGCAATTACCTTGTAAGCATATTTACCATTCGGAATGTATTCTGCCTTGGCTGCGACAACACAATTCTTGTCCTGTTTGTCGTTATGAGTTGCCAACAGATGACCCTGATTACGAACAGAGGCGCGGGAATCCCGTTGATACGAATAGGTATCGATCTGCTGGAGCGTCTTCTGAAGGTGGAAATGGAGCAGGTTCAGGTGATAATTCGCTCACACCTAGGACAGTTGAACGTAGGTTTAGGGTACAATTGCCATGGCCTTTCAGGGTTTTTGGCTCACCTGCTGAGACAAGCAATAGTGGAACTGGTAACAACGGAAACGATGGTAGTGGCGAACACAACACAGAGAATAGAGGGAATCAAAACTCACAGTCAGAGCCAAGACAAGAAGATCTTGATTAG 1128 0.4858 MSSAGGNSGGEGGGGGSAATSAMPQMYFCHQCNCTVSITPSSTSSDLTCPNCDGGFIEEVENPVPTANPYGDSSPFVSFSSELGGLGMGHPPFVFSTSSTAGNGGHGGFDDLSALLGGIGQNRSSQFQDSDAFNPFLFLQNYLQTLRAGGGNVQFVIENSGDPAGTLRLPANLNLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAVEGLPTIQISKEMMASDSSQCAVCKDSFELEEEAKQLPCKHIYHSECILPWLRQHNSCPVCRYELPTDDPDYEQRRGNPVDTNRYRSAGASSEGGNGAGSGDNSLTPRTVERRFRVQLPWPFRVFGSPAETSNSGTGNNGNDGSGEHNTENRGNQNSQSEPRQEDLD* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00215 375 ProSiteProfiles Zinc finger RING-type profile. 229 270 IPR001841 -
Pte9g00215 375 MobiDBLite consensus disorder prediction 274 288 - -
Pte9g00215 375 FunFam E3 ubiquitin-protein ligase RING1-like 190 276 - -
Pte9g00215 375 Pfam zinc-ribbon 25 59 IPR039525 GO:0061630
Pte9g00215 375 MobiDBLite consensus disorder prediction 292 315 - -
Pte9g00215 375 SUPERFAMILY RING/U-box 210 276 - -
Pte9g00215 375 CDD RING-H2_RNF126-like 228 270 - -
Pte9g00215 375 MobiDBLite consensus disorder prediction 271 316 - -
Pte9g00215 375 MobiDBLite consensus disorder prediction 329 375 - -
Pte9g00215 375 Pfam Ring finger domain 228 270 IPR001841 -
Pte9g00215 375 SMART ring_2 229 269 IPR001841 -
Pte9g00215 375 MobiDBLite consensus disorder prediction 335 369 - -
Pte9g00215 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 276 IPR013083 -
Pte9g00215 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00215 Pte-Chr9 2479991 2484263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00215 170 288 C3H Transcription Factor Family AT5G01980 50.420 4.48e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00215 K11982 - qsa:O6P43_005293 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00215 9 2479991 2484263 Pte9g00215 9 2479991 2484263 RCT