Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00186 ATGGTCCTCACTTCTCAAGCTGCAAACTCAGATGAATCTTTGACCTGCACGTTTGCATCTAGATACGTACAAACTTCAGTTTCTAAGTTCAAGTTTCCTGAGAACTCAATCACAAAGGATGCAGCGTATCAGATAATCACTGATGAGTTGATGCTGGATGGGGCACCAAGGCTCAACTTGGCGTCCTTTGTTACCACCTGGATGGAGCCTGAGTGTGATAAGCTCATCTCAGCCTCACTCAACAAGAACTATGTCGACATGGATGAGTACCCTGTTACCACTGAACTCCAGAATCGTTGTGTGAACATGATAGCAAGGTTGTATAATGCTCCTGTTGGAGAAAATGAACCTTCAGTTGGCGTGGCAACTGTGGGTTCTTCAGAAGCAATCATGTTGGCAGGTCTGGCATTCAAAAGGAAATGGCAGCTGAAGAGAAAGTCCGAAGGCAAACCATATGATAAACCCAACATAGTCACTGGGGCAAATGTGCAGGTATGCTGGGAGAAGTTTGCTAGGTACTTTGAGGTGGAACTGAAGGAGGTGAAGCTTTCAGAGGGATATTATGTAATGGACCCGGAGAAAGCAGTTGAATTGGTAGATGAAAATACCATATGTGTTGCTGCAATTCTGGGGTCAACTTTGACTGGAGAATTTGAGGATGTGAAACTTATTCACGAACTTCTAAGTAAAAAGAATAAGGAGACAGGATGGGATACCCCAATTCATGTTGATGCTGCTAGTGGAGGGTTCATAGCTCCATTTCTTTACCCTGATCTTGAGTGGGATTTTCGTCTTCCATTAGTGAAAAGCATCAATGTCAGTGGTCACAAATATGGGCTTGTCTACCCTGGTGTTGGATGGGTTGTCTGGAGGAGTAAGGAGGATTTGCCAGAGGAGCTCATCTTTCACATTAACTATCTTGGAGCTGATCAACCTACTTTCACCCTCAATTTCTCTAAAGGATCTAGTCAGATAATTGCTCAATATTATCAGTTCATACGACTTGGCTTTGAGGGTTATAAGAATATCATGCAAAACTGTTTGGCGAATGCGAAATTCCTGAAAGACATGGTTAACAAAACAGGGCTGTTCGATGTTGTCTCCAAAGACATTGGGGTACCCCTTGTAGCATTCTCTCTAAAAGACAGCAGCCCATACACAGTGTTTGACATATCTGAGCATTTGAGAAAATTTGGATGGATTGTTCCTGCTTACACAATGCCAGCAAATGCACAACATGTGGCTGTTCTTCGAGTTGTGGTTAGAGAGGATTTCAGCAGGAATCTTGCTGAGAGACTTGTGTCAGACATTGATAAAGTATTGAATGAGCTGAAAGCGATGCCAAGTCATAATGCCACCAACATTACCCATGTCACCCCTGCAACCCATAAGCATTCTGATAAAACAGAAACGGAGATTAAGTCAGGTGTAATCGGGAATTGGAAGAGGTTTGTGAAAGAAAAGAAGACTGGAGTGTGCTAG 1482 0.4312 MVLTSQAANSDESLTCTFASRYVQTSVSKFKFPENSITKDAAYQIITDELMLDGAPRLNLASFVTTWMEPECDKLISASLNKNYVDMDEYPVTTELQNRCVNMIARLYNAPVGENEPSVGVATVGSSEAIMLAGLAFKRKWQLKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVELVDENTICVAAILGSTLTGEFEDVKLIHELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMQNCLANAKFLKDMVNKTGLFDVVSKDIGVPLVAFSLKDSSPYTVFDISEHLRKFGWIVPAYTMPANAQHVAVLRVVVREDFSRNLAERLVSDIDKVLNELKAMPSHNATNITHVTPATHKHSDKTETEIKSGVIGNWKRFVKEKKTGVC* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00186 493 NCBIfam glutamate decarboxylase 17 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Pte9g00186 493 Gene3D - 1 65 - -
Pte9g00186 493 Gene3D - 361 448 - -
Pte9g00186 493 SUPERFAMILY PLP-dependent transferases 15 447 IPR015424 -
Pte9g00186 493 FunFam Glutamate decarboxylase 361 448 - -
Pte9g00186 493 CDD DOPA_deC_like 59 439 - -
Pte9g00186 493 Gene3D - 66 360 IPR015421 GO:0003824
Pte9g00186 493 FunFam Glutamate decarboxylase 4 65 - -
Pte9g00186 493 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Pte9g00186 493 FunFam Glutamate decarboxylase 66 360 - -
Pte9g00186 493 PANTHER GLUTAMATE DECARBOXYLASE 1 493 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00186 Pte-Chr9 1999301 2002107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00186 1 494 Calmodulin-binding Proteins AT5G17330 74.155 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00186 K01580 - qsa:O6P43_005261 805.438