Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00179 ATGTCAGGCAATAACTCTAAATCTTCGGTTCCTTCTTCTGAACTATTTTCTAGTGTAGAAAATAGCACTAACCCCACCAAACGGAAACGAAGGCCTGCAGGAACTCCGGATCCAGATGCTGAAGTAGTGTCTCTTTCACCAAAAACATTATTGGAATCAGATCGTTATGTTTGCGAGATCTGCAACCAAGGGTTTCAAAGAGATCAAAATCTTCAGATGCATAGGAGACGACATAAGTTACCATGGAATTTACTCAAAAGGGAGACACCAGTGGTGAGAAAGCGTGTGTTTGTGTGTCCAGAGCCAACATGTTTGCACCATGACCCTTGTCATGCCCTTGGTGATCTTGTTGGTATCAAGAAGCATTTCAGAAGAAAACATAGTAATCACAGGCAATGGGTCTGTGAAAGATGCTCCAAAGGTTATGCTGTCCAGTCTGATTACAAAGCTCACCTCAAAACTTGTGGCACCAGAGGACATTCTTGTGATTGTGGTCGTGTTTTCTCAAGGGTTGAGACTTTTATTGAACACCAAGATGCATGCAGCATATTGGGGCGTCTCCGGTCAGATCGAACGCAGACACTGCAGCCGGGAGCATGTTTGTCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGTGAGACCAATCTAAGCACAGCTCCTTGGCAAGCAGGTACTTTGATAATGACGAAGCTAACTGAAACCGCATTCTTGAACCCTATTACTCCAGCACCAGCTGCTACTGCTGAAAATCCAGTCATGAACAAGAACAACAATAGAGCCTGCCATAATTTGGAGCTTCAGCTTTCCACTACCACGACAAAAAATACCATTGACATTGCTTCATCACCCAAGAGAGATCATGAAAACCACACCACCCAGTTGCAACTCTCAATTGGTTCTTCTGAATATGGTTCTGAGAAAAATGAATCAAACAGTACCAACAAAAACTCACCCAAAGAGAGCAGCTGTAACAACAGTGCGACTGTTAATGACAAACCAAGCAGTGCTGCTGCTTTACAAGAGCAAGCACGTGAGCAGCTAAGGCTAGCGATGACAGAAAAGGCTTACGCTGAAGACGCGAGACAGAAAGCTAAAAGGCTGATAGAATTGGCTGAGCTGGAGTTTTCAAACGCTAAGAGAATAAGGCAACAAGCACAAGTTGAGTTAGACAAAGCTTATTCACTTAGAGAACGCGCAGTCAAGCAAATAAACTCTAGTATTCTTCAAATCAAATGCCATACTTGCAAGCAGCATTTCCAAGCAAGAATGTCATTGAAGGCAGCTCCACATGAAAAGAATTCTTTGGCAGTAACTTACATGGCCACTGCTGTAACGAAAGAAGGTTGTGAAGTAGAGAACGACAATATAAACCACCATGGAAAGACAGCAATACCATAG 1398 0.4335 MSGNNSKSSVPSSELFSSVENSTNPTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKLPWNLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHRQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVETFIEHQDACSILGRLRSDRTQTLQPGACLSRTASSPSPSSETNLSTAPWQAGTLIMTKLTETAFLNPITPAPAATAENPVMNKNNNRACHNLELQLSTTTTKNTIDIASSPKRDHENHTTQLQLSIGSSEYGSEKNESNSTNKNSPKESSCNNSATVNDKPSSAAALQEQAREQLRLAMTEKAYAEDARQKAKRLIELAELEFSNAKRIRQQAQVELDKAYSLRERAVKQINSSILQIKCHTCKQHFQARMSLKAAPHEKNSLAVTYMATAVTKEGCEVENDNINHHGKTAIP* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00179 465 SUPERFAMILY beta-beta-alpha zinc fingers 53 79 IPR036236 -
Pte9g00179 465 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Pte9g00179 465 Coils Coil 354 388 - -
Pte9g00179 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 374 IPR031140 -
Pte9g00179 465 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Pte9g00179 465 Gene3D Classic Zinc Finger 44 130 - -
Pte9g00179 465 MobiDBLite consensus disorder prediction 297 338 - -
Pte9g00179 465 SMART c2h2final6 133 160 IPR013087 -
Pte9g00179 465 SMART c2h2final6 97 127 IPR013087 -
Pte9g00179 465 SMART c2h2final6 56 78 IPR013087 -
Pte9g00179 465 MobiDBLite consensus disorder prediction 1 43 - -
Pte9g00179 465 FunFam protein indeterminate-domain 12-like 35 103 - -
Pte9g00179 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Pte9g00179 465 MobiDBLite consensus disorder prediction 1 23 - -
Pte9g00179 465 MobiDBLite consensus disorder prediction 199 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00179 Pte-Chr9 1888354 1890721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00179 23 453 C2H2 Transcription Factor Family AT2G01940 51.357 5.90e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte9g00179 zf-C2H2 0.0044 CL0361