Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00178 ATGGAAGGTGAGATCAACACAAATGCTGTATATAGAGAATGTTTGAGGAACCATGCAGCTAGCCTCGGAAGTTATGCCACAGATGGGTGTGGAGAGTTTACACTAGATGATAATTCACCAGGTGGGTTACAATGTGCAGCCTGTGGTTGCCACCGCAACTTCCACCGGAAAGTTGCATGTCCAACAAGCCGTGCGGGGAGAATTGGTTTTAACAGTTGTGGAAGAGACATAGAAATGGCAACTCATCATGAGCTCATCGACTATGGTGGTGGGGGTGGAAGTGGGAGTGAAGGAAGGATACCTATCACTATGGCTGAATCTGGGGAGGCAGACCGGTCAGGGAAGAAGAGGTTCAGGACCAAGTTCACAGCAGATCAGAAGGAGAAGATGTTGGCCTTTGCTGAGAAGCTGGGGTGGAAGCTGCTAAGGAAAGATCTTGAAGATGAGATTGAGAGGTTCTGCAGAGAAATTGGAGTGAGTAGACAAATCTTTAAGGTGTGGATGCATAACCACAAAAATTCATCATCATCATCTTCTACTTCCACAGGCAATGCCTCATCTCTCACCCAGTAG 573 0.4712 MEGEINTNAVYRECLRNHAASLGSYATDGCGEFTLDDNSPGGLQCAACGCHRNFHRKVACPTSRAGRIGFNSCGRDIEMATHHELIDYGGGGGSGSEGRIPITMAESGEADRSGKKRFRTKFTADQKEKMLAFAEKLGWKLLRKDLEDEIERFCREIGVSRQIFKVWMHNHKNSSSSSSTSTGNASSLTQ* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00178 190 FunFam Zinc-finger homeodomain protein 2 103 177 - -
Pte9g00178 190 Gene3D - 102 179 - -
Pte9g00178 190 NCBIfam homeobox domain, ZF-HD class 115 173 IPR006455 -
Pte9g00178 190 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 174 - -
Pte9g00178 190 SUPERFAMILY Homeodomain-like 107 173 IPR009057 -
Pte9g00178 190 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 11 58 IPR006456 -
Pte9g00178 190 MobiDBLite consensus disorder prediction 171 190 - -
Pte9g00178 190 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 11 57 IPR006456 -
Pte9g00178 190 Pfam ZF-HD protein dimerisation region 9 58 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00178 Pte-Chr9 1879959 1880611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00178 9 175 ZF-HD Transcription Factor Family AT2G18350 44.505 1.77e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte9g00178 ZF-HD_dimer 4.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00178 - - jre:109020973 257.299