Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00166 ATGGTGCTGGGCTGGAGAAGAAGGAAGAGCAACCACAGAAATGGGGTTAAGCCTGACATGGAGATAGTGACACCAAACCATTTCAGGTGTCCGATATCACTTGATCTCATGAAAGATCCTGTCACATTGTCAACCGGCATAACGTATGATCGTGAAAGCATTGAGAGGTGGTTCGAGGAAGGGAATGTTACGTGTCCGGTCACAAATCAGATAGTTAGGAACTTTGATCAGATTCCTAATCATACGCTTCGGATGATGATTCAAGATTGGTGTGTGAAGAATCAACAGTTTGGTGTCGAAAGGATATCCACACCCAGAATTCCAGTCTCGCCTATGGAGGTGTATGAGCTTCTTGAACGTTTGAAGAACTCGGCTCGACGGGGTGATCAGTATGGATTCTTGGAATGGGTGCAGAAGATTGAGAGATGGGGTGGTGAGAGTGAAAGAAACAAGAGGTGTATCGTAGAAAATGGAGCTGCTGATGTTTTCGCTGCTGCATTTGATTCGTTTGCAGCTGATTCGGTTGAGAAGAATGCAAGTGTTTTGGAGGAGATCTTGTCTGCTTTGTATTGGATGTTTCCACTAACCTCAGAAGCTCAGAAGTCCTTAGGATCAAAGAATTCCATACATTGCCTGGTTTGGTTTTTGAATCACCAAGATGTTTCAAGAAAACAAAAATCCATTCTTGTATTGAAAGAAGTCCTTTCTTGTGGTGATCAAGGGCACTTGGAAGTTCTTACAGCCATAGACGGAGTCAATGAGTTATTGATGGAGTTTGTCAACAGAAGGATATGTCCAACTCCAACCCTAACAAAAGCTTCATTGGCTGTTGTTCAGTACATGGTTTCATCATCTTCTCCTTCATCTGAGAAAACAAAATTGTCATTTGTAAAATTGGATTTGGTTTCCTCACTTCTTGAAATTCTCATTGACTCAGACAAGACCCTTTGTGAGAGAGCTTTGGGTGTGTTCGATTCACTTTGCAGCTGTGAAGAAGGAAGAGAAAAGGCCTACGCCAATGCTCTAACAATTCCAGTTTTGGTGAAGAAGATCCTGAGGGTGTCTGAATTGGCAACTGAATTTTCAGTTTCTGCAATATGGAAGCTTGTTAAGAATGAAGGAAAGGTAGATGAAAGAGTTATGGTGGAAGCACTTCAAGTTGGTGCCTTTCAAAAGCTTCTGTTGATTTTGCAGGTTGGTGGGGGTTATGAGACAAAGGGGAAAGTAACTGAGCTTCTTAAACTGCTGAATCCTTACAGGGCAGATTTGGAATGCATAGAGTCAGTGGATTTCAAAAATCTCAAGAGATCATTTTGA 1317 0.4207 MVLGWRRRKSNHRNGVKPDMEIVTPNHFRCPISLDLMKDPVTLSTGITYDRESIERWFEEGNVTCPVTNQIVRNFDQIPNHTLRMMIQDWCVKNQQFGVERISTPRIPVSPMEVYELLERLKNSARRGDQYGFLEWVQKIERWGGESERNKRCIVENGAADVFAAAFDSFAADSVEKNASVLEEILSALYWMFPLTSEAQKSLGSKNSIHCLVWFLNHQDVSRKQKSILVLKEVLSCGDQGHLEVLTAIDGVNELLMEFVNRRICPTPTLTKASLAVVQYMVSSSSPSSEKTKLSFVKLDLVSSLLEILIDSDKTLCERALGVFDSLCSCEEGREKAYANALTIPVLVKKILRVSELATEFSVSAIWKLVKNEGKVDERVMVEALQVGAFQKLLLILQVGGGYETKGKVTELLKLLNPYRADLECIESVDFKNLKRSF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00166 438 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Pte9g00166 438 SUPERFAMILY ARM repeat 137 398 IPR016024 -
Pte9g00166 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 102 IPR013083 -
Pte9g00166 438 FunFam RING-type E3 ubiquitin transferase 24 96 - -
Pte9g00166 438 Pfam U-box domain 25 95 IPR003613 GO:0004842|GO:0016567
Pte9g00166 438 SUPERFAMILY RING/U-box 22 99 - -
Pte9g00166 438 PANTHER WDSAM1 PROTEIN 21 418 IPR045185 GO:0061630
Pte9g00166 438 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Pte9g00166 438 Gene3D - 113 414 IPR011989 -
Pte9g00166 438 CDD RING-Ubox_PUB 25 76 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00166 Pte-Chr9 1802934 1804471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00166 17 439 U-box Gene Family AT5G37490 43.765 2.77e-115 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00166 - - qsa:O6P43_008457 631.328