Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00152 ATGGAGAGGGATTTCTTAGGATTGGTGCCTCAAAGTGGTTCACTAGCTGAGAAAGAGGCGGCATATGACGGGCCAAAAGATTCAGCAATAATGAGTTCAGGGATGCAGTGGTCATTTTCAAACATGGGCTCTCCTGTTCCTCAGTTTCTGTCCTTTAAAGCTAATCAAGATGATGGGCTAAAGAAGTCTTCTCGTGATGCTCTAGCTTCGCCTGGATTTATGACTATTTCAACTGCTGATGCTTCAAAATCTGACCAAAAATCAGTTTCAGGCATAGTTCAGAAAAAATTGATGATGGGTCAGCATGTCGGAAGCCAATGTGCAATGACAGTCCATCCTGTTCTAGCCCCAGAAGCAGGAATACATTCTTTCTCCAATCAATCCAATCAGACAAGTCATATTGTCATGAGTAATTCTGTCCTCCATTCTTGCCTTACATCAAATGGACAGAATGGGTTGAGCTCCATTATAAAGACACAACCACTTGGAGGATTTCCACAGGCAGCCCCTGTATTATCTGTTCTGCCCCCTAGAGATCCCGTTGTGGGGACGACTGATCTAAGGAATACTTCTAAACCCTCTACTGCACCTGCTCAGCTGACTATATTCTACGGTGGTTCGGTTTGCGTTTATGATGACATATCTCCTGAGAAGGCTCAAGCCATTATGTTACTGGCTGGGAATGGATCTTGTCCAACACCAAACAAGACAGTTCCGTGGTCTCCGTTGCAGTCACCAGTGTCAATGCCATCAAGGGGTAGTGATTACTTTATCATGACCCAATCCTGTTCCTCATCACTCCCCAGTCCTTTGTCGCTCACCTCCCATACTGGACCTCCACCTGTGACAGTTTCTTCTACTATCAATGAGCCACTAAAGGCAAAACCAGTATTCTCTCCAGTATCAAATGTTAACTGTGTTGAGCTTCCTAATGCAATCAGTTCAGTAGGAGCTGCATCTACTACAACGGCTCCTTCAGTAGCTTTGCCTCAAGCTCGTAAAGCCTCATTGGCTCGATTTTTAGAGAAGCGGAAGGAGAGGTCCATGGTTACATCGCCATATACTTTAAGCAAAAGCTCACATGAAGATAACACACCTGGATATGAACGTCTAAGGCCTGAAGGCTGTGCTAACATCCACTTCATCACTAGAGGTTTAGAGCTTACGCAATTAGAGGAACAAACTCCTGCTGTCACTCCAACAAAAGTTGTTGGAATAGTTCGTAGTGAAATACCAAGCATATTTGTGCCAGCAAATGAACCTAACTCTTCTCAGTGGTTCTGTGTTGATGTTCCTGCAATTCTCCGGGCATGTGGACTTCCTGAAACCACTCTTTATATTGCAGACATTCATGAAAATATTGATACAAGCCATCCTTATCCTGTTCCAAAGGATGTTGATACACTGATTCCAAGTTCAGTCATGCCCCAGGACCATTTAAACTATATACTATGGTATTCTATCTCTGGCAGTTATTTTTATGGCTTGTAA 1491 0.4366 MERDFLGLVPQSGSLAEKEAAYDGPKDSAIMSSGMQWSFSNMGSPVPQFLSFKANQDDGLKKSSRDALASPGFMTISTADASKSDQKSVSGIVQKKLMMGQHVGSQCAMTVHPVLAPEAGIHSFSNQSNQTSHIVMSNSVLHSCLTSNGQNGLSSIIKTQPLGGFPQAAPVLSVLPPRDPVVGTTDLRNTSKPSTAPAQLTIFYGGSVCVYDDISPEKAQAIMLLAGNGSCPTPNKTVPWSPLQSPVSMPSRGSDYFIMTQSCSSSLPSPLSLTSHTGPPPVTVSSTINEPLKAKPVFSPVSNVNCVELPNAISSVGAASTTTAPSVALPQARKASLARFLEKRKERSMVTSPYTLSKSSHEDNTPGYERLRPEGCANIHFITRGLELTQLEEQTPAVTPTKVVGIVRSEIPSIFVPANEPNSSQWFCVDVPAILRACGLPETTLYIADIHENIDTSHPYPVPKDVDTLIPSSVMPQDHLNYILWYSISGSYFYGL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00152 496 Pfam SURF1 family 391 489 IPR002994 GO:0016020
Pte9g00152 496 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 122 364 IPR040390 -
Pte9g00152 496 SMART tify_2 193 228 IPR010399 -
Pte9g00152 496 Pfam Jas motif 330 354 IPR018467 -
Pte9g00152 496 ProSiteProfiles Tify domain profile. 193 228 IPR010399 -
Pte9g00152 496 Pfam tify domain 196 227 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00152 Pte-Chr9 1636543 1651990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00152 35 363 Tify Gene Family AT3G17860 39.296 3.66e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pte9g00152 SURF1 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00152 K13464 - qsa:O6P43_005211 316.62