Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00130 ATGGATTATCAAATGCATCACAATCAAGCAATGGATCGAGAGGGACAGAAGCAGCCTCAACCAATGGACTCACAAGTGACCCTTTTGATTCGTCATCTTCCTGAAGCTATTACTCATGACACTCTCACTCAAATCTTGTCACATTATGGAGCTTCCTCTGTCCGTCTTTGTTCCGGTGGAAGGTTGAGAAATTGTGCTTTTGTTGATTTCAGAAATGATACCTTGGCTTATCAAGCTCATTCCAAATTAAATGGGCTGAGGTTTCTTGGTAAAGTCCTCTCAGTGGAGAGAGCTAGTAAATCAACAGGCAACAACGAGGTACAAAGTGAACCTCAAATGTTAAAGGACTCAAAACCTGCGACAGCAACAGTGATGGACAATCTTGGTCTTAAAGTTCTCAATGAAGGTTCACAATCAGGGTGGTTGACTCCTAGGGAACCTGTTGCCCCAAGACTTGGTGTTGACTATCCATTTCCTCCTTACCTTGAGTATGCGTACCCTCCACCAGATGACAATATACTGGCCAACATTGTAAACACTCTAATTGCTGTTCCACGGTTTTACACTCAGGTGTTGCACTTGATGAACAAAATGAACCTTCCTGCTCCATTTCGCATGGCTCTGCCCACCCCACCTTTGCTGCCCTCCGCTCCAGAGCCAAAGCAACCAGTGCCTACTTCACAACCTCCTCCTCCTCCTGCTTCTGTATACTTTAAACCTAAACACACAGACCTGTCCAGTGAAGAATCGGAAATGGAGTCTTCAGATGAGGAGGTTATTGGGAATGCTGATTCCACTGCTGCTGCAATATTAGGGAAACCTGCAAGAAAACGTGTCAAGCGTGAAGCTATTGTCGGCCCTGCAATTGATAAAGATGTTGCTCATGAAGCTGTTGGTCTCAAGCCATCCACGTTGATCCCAAAGGAAATCCCAATGATAAAAAAGAGAAACCCTGTGTTGCAGATTAAGATTGCTCCCAAAACAGTTCAAAATGAGCAGAAGGAATATAGCGTGCCAAAGGAAACAGAGGAGCCCGATACACAAGTTGCAGATCCGAGAACAATTTTGACTCCAAAAGAAATAGAGAGAGGAAAGTTGCCACTAGAGGAAATCTTATCTCTTCCAATGTTTAAGAACTATGCTGCTGGAAATCCTACTTCTAAGCTGTATATCAAGAACTTGGCAAAAGATGTTACTGCTGATGACTTCTATTTTATCTTTGGGTCTTTTTTCGGAAATATTGATGCTGCTAGAAGTGGTCTAAATGTGAACCTGATGCAGGAAGGAAGGATGAGGGGGCAAGCTTTTGTGACATTTCCTTCAGCAGAACTTGCCCATCACGCATTGAATCTAGTTAATGGATATGTGTTGAAAGGCAAGCCCATGATTATTCAGTTCGGACGCAAATAA 1410 0.434 MDYQMHHNQAMDREGQKQPQPMDSQVTLLIRHLPEAITHDTLTQILSHYGASSVRLCSGGRLRNCAFVDFRNDTLAYQAHSKLNGLRFLGKVLSVERASKSTGNNEVQSEPQMLKDSKPATATVMDNLGLKVLNEGSQSGWLTPREPVAPRLGVDYPFPPYLEYAYPPPDDNILANIVNTLIAVPRFYTQVLHLMNKMNLPAPFRMALPTPPLLPSAPEPKQPVPTSQPPPPPASVYFKPKHTDLSSEESEMESSDEEVIGNADSTAAAILGKPARKRVKREAIVGPAIDKDVAHEAVGLKPSTLIPKEIPMIKKRNPVLQIKIAPKTVQNEQKEYSVPKETEEPDTQVADPRTILTPKEIERGKLPLEEILSLPMFKNYAAGNPTSKLYIKNLAKDVTADDFYFIFGSFFGNIDAARSGLNVNLMQEGRMRGQAFVTFPSAELAHHALNLVNGYVLKGKPMIIQFGRK* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00130 469 SUPERFAMILY RNA-binding domain, RBD 26 467 IPR035979 GO:0003676
Pte9g00130 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 93 IPR000504 GO:0003723
Pte9g00130 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 389 461 IPR000504 GO:0003723
Pte9g00130 469 Gene3D - 381 469 IPR012677 -
Pte9g00130 469 MobiDBLite consensus disorder prediction 1 22 - -
Pte9g00130 469 CDD RRM1_RBM40_like 27 98 IPR034147 GO:0005515
Pte9g00130 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 100 IPR000504 GO:0003723
Pte9g00130 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 387 469 IPR000504 GO:0003723
Pte9g00130 469 SMART rrm1_1 27 96 IPR000504 GO:0003723
Pte9g00130 469 SMART rrm1_1 388 465 IPR000504 GO:0003723
Pte9g00130 469 CDD RRM2_RBM40_like 386 467 - -
Pte9g00130 469 Gene3D - 1 111 IPR012677 -
Pte9g00130 469 PANTHER UNCHARACTERIZED 22 469 IPR045164 -
Pte9g00130 469 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 382 469 - -
Pte9g00130 469 MobiDBLite consensus disorder prediction 211 237 - -
Pte9g00130 469 MobiDBLite consensus disorder prediction 211 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00130 Pte-Chr9 1443606 1450213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00130 387 465 Eukaryotic Initiation Factors Gene Family AT3G16380 32.911 2.77e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00130 K13157 - qsa:O6P43_009802 595.504