Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00124 ATGGACCCAAATCCGATCCCGTCGTATACGCTCATGTCCTCCACCGGCGGCCTTCCTCTGCCTTTCCCAACACCCACAATCGCTGATGTTGAGAACCACATAGTTCCGGCAGCTAACCCATCTCCTCCGGCACCACAAGCTCCACAGCACCCGCCATATGCTGATATGATTTGTACCGCAATTGCTGCTTTGAAAGAGAAAGATGGGTCAAGTAAAAGGGCTATTGCCAAGTATATAGAGAAAGCTTATCCTGGTCTGCCAGCCACTCACTCTGCTTTGTTGACTCACAATCTCAAGCGGTTGAAAAGCAGTGGTCACCTTGTTATGGTCAAGAAATCGTACAAGCTTTTTAGATCTGATGATGATACTGCTGCAACCGCTAACGTTCCCTCACAGTCAGAGCCTCAGTCTATTCCACCTACCAGAGGTCGCGGTCGACCGCCGAAGAACAAGACCCAGCAGCCTCTGGCTCCTCAGATTCCTCAGTATCAGCAGCCTCAGCCGGGACTGTTTCAGAACGAACAATCCCAGCTGGCACAACCTCAGTTTCAGGCTCAGCCTCAGCAGCAGTTTACAATGGCTAACACACAGCAACAGTATGCTGACCCGGTTTTAGTTGCACTTGGGCTCGTGGATGAGCCAGCAATTGTACAGAAGAGGAGTCCTGGTAGGCCAAGTAAGAATGCGAGTCCGGCGGATGTAACAGGACAAGTCGGGCCAGTGTCAGTAGGAAGAAAGAGAGGACGGCCACCTGGTTCCAAAGGAAAGAAAGCTGGACGTCCTCCAAAGCCGAAATCTGTGTCTTCTATCACCAATGGTTTGAAAAGAAGGCCTGGCCGTCCACGTAAGATTCAGCCGCCTGTTGTTCCTTTTGCTCCTGCAACTGTACAAGACATTGCGCCACCAAATGATGCAGTAGCAGGTAACCAAGCTCCTAATGTGCCAGCTATGCCTAACACTGGACCGGCAGCTCCAAATGTAACAACTATGTCTGCTCCTAGCATACATGTTGTACCTAATGCCAATTCGCCAAGGCGTAGAGGAAGGCCAAGGAAGTATCCTGTTGGTTTGACACAAGTTCCAGTTGCCGGTGAAATTGCTACAGGTAGGGGACGTGGTCGAGGAGTTGCCTCCAGACGGGGTGGGCTTTCATATGTTGGAGGGTACATGAGGCCCAAAAGCTCCACTGGACGACCTGTAGGACGGCCGAGGAAGAATCCTGTGTTAGGAACAAATGCTTCCAATGGAGAGCTTAGTAAGAAACTAAAACACTTTGTAAGTCGCAAATTTTTGGTTTCTTTTTTTTTCCTGTTTAATATGATGGAAGAATTGAACTTTTTGGCTATGATTTTAAATTTACAGCAATCAAAAGTCAAAGAAGCAGTCGATGTCTTGAAGCCTAATTTTACCAATGAAAGCCCGGTTGCTGCAATAAGAGCAATCAAGGATTTAGAATTGCTAGCTACTGTAGACCTTAATGCACCGTTTAGAGATGACACAACACAGCAGCCTCCAGAGCCGTTGTCACAAGTGCCGTTGCAGCCTGATTCCTATCTCAATCCCCAGTAG 1569 0.4863 MDPNPIPSYTLMSSTGGLPLPFPTPTIADVENHIVPAANPSPPAPQAPQHPPYADMICTAIAALKEKDGSSKRAIAKYIEKAYPGLPATHSALLTHNLKRLKSSGHLVMVKKSYKLFRSDDDTAATANVPSQSEPQSIPPTRGRGRPPKNKTQQPLAPQIPQYQQPQPGLFQNEQSQLAQPQFQAQPQQQFTMANTQQQYADPVLVALGLVDEPAIVQKRSPGRPSKNASPADVTGQVGPVSVGRKRGRPPGSKGKKAGRPPKPKSVSSITNGLKRRPGRPRKIQPPVVPFAPATVQDIAPPNDAVAGNQAPNVPAMPNTGPAAPNVTTMSAPSIHVVPNANSPRRRGRPRKYPVGLTQVPVAGEIATGRGRGRGVASRRGGLSYVGGYMRPKSSTGRPVGRPRKNPVLGTNASNGELSKKLKHFVSRKFLVSFFFLFNMMEELNFLAMILNLQQSKVKEAVDVLKPNFTNESPVAAIRAIKDLELLATVDLNAPFRDDTTQQPPEPLSQVPLQPDSYLNPQ* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00124 522 SUPERFAMILY "Winged helix" DNA-binding domain 48 118 IPR036390 -
Pte9g00124 522 PRINTS AT-hook-like domain signature 141 151 IPR017956 GO:0003677
Pte9g00124 522 PRINTS AT-hook-like domain signature 242 253 IPR017956 GO:0003677
Pte9g00124 522 PRINTS AT-hook-like domain signature 342 352 IPR017956 GO:0003677
Pte9g00124 522 MobiDBLite consensus disorder prediction 123 167 - -
Pte9g00124 522 MobiDBLite consensus disorder prediction 124 139 - -
Pte9g00124 522 MobiDBLite consensus disorder prediction 152 167 - -
Pte9g00124 522 MobiDBLite consensus disorder prediction 496 522 - -
Pte9g00124 522 MobiDBLite consensus disorder prediction 387 413 - -
Pte9g00124 522 FunFam Histone H1.2 46 126 - -
Pte9g00124 522 Pfam linker histone H1 and H5 family 50 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte9g00124 522 SMART AT_hook_2 344 356 IPR017956 GO:0003677
Pte9g00124 522 SMART AT_hook_2 141 153 IPR017956 GO:0003677
Pte9g00124 522 SMART AT_hook_2 219 231 IPR017956 GO:0003677
Pte9g00124 522 SMART AT_hook_2 275 287 IPR017956 GO:0003677
Pte9g00124 522 SMART AT_hook_2 397 409 IPR017956 GO:0003677
Pte9g00124 522 SMART AT_hook_2 244 256 IPR017956 GO:0003677
Pte9g00124 522 SMART h15plus2 47 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte9g00124 522 CDD H15 53 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte9g00124 522 Gene3D - 45 124 IPR036388 -
Pte9g00124 522 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 49 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte9g00124 522 PANTHER HISTONE H1 40 286 - -
Pte9g00124 522 MobiDBLite consensus disorder prediction 218 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00124 Pte-Chr9 1397223 1400563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00124 56 116 Single Myb Histone (SMH) Gene Family AT1G49950 44.262 8.58e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00124 - - qsa:O6P43_005169 303.523