Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00120 ATGGGTATCAAAGATCTTCTCAAATTCATGAAACCGTATATTGAGCCAGTTCACATCAAGAAATTTGCTGGCAAAAGAGTGGGTATTGATGCATACTCCTGGCTCCACAAAGGAGCTTATTCATGTAGTATGGAGCTGTGTTTAAATTCGGACAGTGATAGAAAAACGAGGTATTTGGATTACTTTATGCACAGAATCAATCTCCTTCGCTATTACGAGGTTACCCCGGTTGTTGTTTTCGATGGTGGTAACATGCCTTGTAAGGCTGCAACTGAACAGGATAGGCACAGAAAACGCAGTGCTAATCGCGAGTCAGCAATGGAAAAACTCAAAAATGGGGATGTCAGTGCAGCCTCTGAGTTATTCCAGAGAGCTGTGTGTATCACGCCATCCATGGCATACCAGCTGATTCACATATTGAGATCAGAGAACATTGAATTTGTTGTAGCACCATATGAAGCCGATGCTCAATTGGCATATCTCTCCAATCTCGAAGCAGAGAAAGGTGGAATCATTTCGGTGATCACAGAGGATAGTGATTTATTAGCATATGGTTGTCCATCTGTTATTTTTAAGATGGACCGTCACGGGAATGGTGAAAAGGTAGAGTTAGACAGAGTTTTCAATGCTGAGTCTTGTAAGCCTTGCTTTCGACAATTTGACAAGGAACTCTTCACAGGCATGTGTGTCCTTGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGGATAGGAATTGCAAGAGCTCATGCCTATATGTCCAAGTACAGGAACTTAAGTCGTGTTTTATCTGTCCTCAAGTTAGAGAAAGGAAACCAAGTACCTGAAGATTACGCCAAGTCCTTTAAAGAGGCAGTCGCAGTATTTCAGCATGCACGAGTATACGATGCCAAAATGAAGGAACTCAAACACATGAAGCCTCTTACTGAAGAGCTTCTTCAGTATCTTGATGGAGATCTTGATTTTCTAGGGCCAGAAATGCCTCCAACAATAGTTACTGCTATTGCTGAAGGAAATCTAAATCCAATAACCATGGAGGCTTTCGATGAAATTCCCTCTCCTAAATATTCTCCAGATCCTGTTGTCCTCCAAATTCGTAGCAAGCGCCAGAAAACTAAAGCTCCCAAATCAATGACAGACGAGAGCTGCTTTATGGTATTTTCACTGCAGACATGTAATCGAACTTTTGCGATGTCTACAGCTATAAGGGAGAATATGGTGCTGAAGAAAGAGAAGGGTGTCAATGAATTTCTCGCACTTGAGAAGTTAGTCGTGCCACTGGAAACTAATAAGATACTGGAAGAAACGGGTCTCTTCGTTGAGGCTTCATTGAAGGTTCCTGACAACAACCCCTTCAAGATAAAAACACATGAGGAAATTTCTTTGCCAACGAGAGAGAGCTCCAGTGAACAGCTTTCACTTGGAGGCATGTCTGAAGACCAGGACTATTTGCGTCTGTCACCAGATGACAATCAACACAAGGTTTCTGATGATGGTTCAATCAAAAGAAAGTTCCAAAGCATTTCTTCACACCAGCTACAGATTAATTGTGAACAAATTTCGGTTCTTACAGAAGTTGAGGATTCAGGAATGATGTGCATGACGATGGCATCGCAAGAAAGCGTAAATTCAAAGCTTACAAAAGATGCAGCTACGAAAGGTCAAAGTGAAAGTGCAAGAAAAACAAAGAAAGGCAATCACAAAAAATCAGATACAAAGAATACCAGTATTTTGAATTTCTTTTCTCGAGTTTAA 1752 0.4127 MGIKDLLKFMKPYIEPVHIKKFAGKRVGIDAYSWLHKGAYSCSMELCLNSDSDRKTRYLDYFMHRINLLRYYEVTPVVVFDGGNMPCKAATEQDRHRKRSANRESAMEKLKNGDVSAASELFQRAVCITPSMAYQLIHILRSENIEFVVAPYEADAQLAYLSNLEAEKGGIISVITEDSDLLAYGCPSVIFKMDRHGNGEKVELDRVFNAESCKPCFRQFDKELFTGMCVLAGCDFLPSVPGIGIARAHAYMSKYRNLSRVLSVLKLEKGNQVPEDYAKSFKEAVAVFQHARVYDAKMKELKHMKPLTEELLQYLDGDLDFLGPEMPPTIVTAIAEGNLNPITMEAFDEIPSPKYSPDPVVLQIRSKRQKTKAPKSMTDESCFMVFSLQTCNRTFAMSTAIRENMVLKKEKGVNEFLALEKLVVPLETNKILEETGLFVEASLKVPDNNPFKIKTHEEISLPTRESSSEQLSLGGMSEDQDYLRLSPDDNQHKVSDDGSIKRKFQSISSHQLQINCEQISVLTEVEDSGMMCMTMASQESVNSKLTKDAATKGQSESARKTKKGNHKKSDTKNTSILNFFSRV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00120 583 Gene3D - 218 291 - -
Pte9g00120 583 CDD H3TH_FEN1-like 223 295 - -
Pte9g00120 583 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Pte9g00120 583 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Pte9g00120 583 Gene3D - 1 213 - -
Pte9g00120 583 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 354 IPR036279 -
Pte9g00120 583 FunFam exonuclease 1 218 291 - -
Pte9g00120 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Pte9g00120 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Pte9g00120 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pte9g00120 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Pte9g00120 583 SMART xpgn3 1 102 IPR006085 GO:0004518
Pte9g00120 583 SMART xpgineu 141 213 IPR006086 GO:0004518
Pte9g00120 583 MobiDBLite consensus disorder prediction 460 498 - -
Pte9g00120 583 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 553 IPR006084 -
Pte9g00120 583 MobiDBLite consensus disorder prediction 482 498 - -
Pte9g00120 583 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Pte9g00120 583 MobiDBLite consensus disorder prediction 540 583 - -
Pte9g00120 583 FunFam Exonuclease 1, putative 1 214 - -
Pte9g00120 583 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Pte9g00120 583 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00120 Pte-Chr9 1363535 1368447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00120 1 315 Core DNA Replication Machinery Family AT5G26680 26.140 3.99e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00120 K10746 - qsu:112037099 701.819