Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00096 ATGGGGGAGAAACAATGGTACTTCTTCAGCTTGCGAGATCGAAAGTACCCGACAGGGCTTCGAACCAATCGTGCCACCGAATCGGGCTACTGGAAAACTACAGGCAAGGACAAGGAGATCTTCTGTTCAGGGGTTTTGGTCGGAATGAAGAAAACACTAGTGTTCTACAAGGGTAGAGCTCCAAGGGGTGAGAAAAGCAATTGGGTCATGCATGAGTATAGGCTTGAAAATAAGCATCCTTTGAAAACTACAAAGGAAGAATGGGTGGTTTGCAGGATCTTCCAGAAGATGTTAGCAGTGAAAAAGCCACAGCAGACCATATCCTCCCAGCCATCTCTTGAGGAATCAAATTGTGAGATAAACTCAATTGCAAATGAATTTGGAGACCTCAAACCACAAAACCTAACCAGCATCACCAATTCATCAACCCCATTTGACAACGTTGGATTATCAGAAAACTATAATCTCGGTAATTGTAATGTTGACACGAGCATGAACTTGAACATGCAATGGCCTATTACATCTGAGATCCCAACACTTCCATTGCTTCAGTGGCCTACAGGGTTACTGAGCACAAACCTTTCCGTCAATTCCTTGCTACTTAAGGCATTACAACTCAAAAGTCTACAAACAAGAGAAGCTGCAAGTGTACATCATAATTACGCTTTTATGCCATCACCTCCACCATTAACAAGAACTTCACAGATTGAGAATGAATTGATGAGTTCAGACTTCAATGCTTCTTCCTCAAAGGTTTTCGATTGCATGGCGCCACAGCAGCAGCAACAACAGCAGGAGCACCCATTCAATTTGGACTCCATTAATTGGTGA 831 0.4308 MGEKQWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFCSGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHPLKTTKEEWVVCRIFQKMLAVKKPQQTISSQPSLEESNCEINSIANEFGDLKPQNLTSITNSSTPFDNVGLSENYNLGNCNVDTSMNLNMQWPITSEIPTLPLLQWPTGLLSTNLSVNSLLLKALQLKSLQTREAASVHHNYAFMPSPPPLTRTSQIENELMSSDFNASSSKVFDCMAPQQQQQQQEHPFNLDSINW* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00096 276 Gene3D NAC domain 1 99 IPR036093 GO:0003677|GO:0006355
Pte9g00096 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 213 - -
Pte9g00096 276 Pfam No apical meristem (NAM) protein 2 75 IPR003441 GO:0003677|GO:0006355
Pte9g00096 276 ProSiteProfiles NAC domain profile. 1 96 IPR003441 GO:0003677|GO:0006355
Pte9g00096 276 MobiDBLite consensus disorder prediction 257 276 - -
Pte9g00096 276 SUPERFAMILY NAC domain 2 96 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00096 Pte-Chr9 1164333 1165616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00096 1 274 NAC Transcription Factor Family AT3G18400 50.704 1.35e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte9g00096 NAM 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00096 - - qsa:O6P43_005092 329.331