Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00086 ATGATGCTCGGAGAGAGTCACCGTGCAAATCCGACCATACATGTTCCTCCTTGGCCTGTCTTGGATGATCCAACGGCTGACATGTACTCCCCATACCCAATAAGTGGTGTCTACGAAAACATAGAAGGCAATGGCAACAGCGGAGGTGACTACTCTCCGCTCTATCTGCAGGAGGCATTAGCTGCGTTACAACGTTACCTACCTTCAAATGACTCAGTCGGTGGGGTCGATGTTGACTCCGATTCGGAGCTCTCCGGTCGCGAGTCGGATGCTCCTATAGATGCTTACTCTTGTGATCAGTTCCGAATGTTTGAGTTTAAGGTGAGGAAGTGCGCGCGTGGGAGGTCACATGACTGGACTGAATGTCCCTACGCTCATCCTGGTGAGAAGGCTCGCCGGAGAGACCCCAGAAAGTATCATTATTCCGGTACTGCATGCCCAGATTTTCGCAAGGGGAGCTGTAAGAAAGATGATGCCTGCGAGTTTGCGCATGGAGTTTTTGAGTGTTGGCTACATCCAGCGCGTTACAGGACTCAGCCATGCAAGGATGGGACAAGCTGCCGGAGAAGGGTGTGCTTCTTTGCTCACACGCCGGAGCAACTGCGGCTGGTACCTCAGCAGAGTCCAAGAAGTGCAAACGCTGCTGATTCCTTTGAAGGGTTTCCACTGCGTCAGTCTTTCGAGGCATCCTGTGTGAAAAGTTTGCCATTTGTAGTCTCTCCTCCCGCTATTTCGCCGCCGGCCACGCCTCCTACAGAGTCTCCTCCTATGTCGCCTATTACTCAGACACTGAGTCGATCGCTGGGTTCAAACTCTGTTCATGACGTGATGGCTTCTCTGCGTAATCTGCAGCTTGGTAAGGTAAAATCCTTTTCTCCTCGGAATGTTCAGATTGGGTCTCCAGGGTATGGATCTCCGAGGAGATCGGTGCTCCGACCCGGGTTCTCTAGCATGCCATCCACTCCAACTCAAGTCCAAACCCGTCAGTGTCTTAATTATTTTGATGCCTGGGATCGAAATTACGAGGAGCCACCCATGGAGAGGGTAGAGTCAGGTAGAGACATAAGGGCTAAGATGTTTGAGAAGCTGAGCAAAGAAAATTCTCTGGAGCGACCCGACCTGGATCCAGTTACAAGTGGTCCGGATGTTGAGTGGGTTTCTGACCTGGTAAAATGA 1176 0.5153 MMLGESHRANPTIHVPPWPVLDDPTADMYSPYPISGVYENIEGNGNSGGDYSPLYLQEALAALQRYLPSNDSVGGVDVDSDSELSGRESDAPIDAYSCDQFRMFEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKDDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSANAADSFEGFPLRQSFEASCVKSLPFVVSPPAISPPATPPTESPPMSPITQTLSRSLGSNSVHDVMASLRNLQLGKVKSFSPRNVQIGSPGYGSPRRSVLRPGFSSMPSTPTQVQTRQCLNYFDAWDRNYEEPPMERVESGRDIRAKMFEKLSKENSLERPDLDPVTSGPDVEWVSDLVK* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00086 391 Gene3D - 98 168 - -
Pte9g00086 391 ProSiteProfiles Zinc finger C3H1-type profile. 141 167 IPR000571 GO:0046872
Pte9g00086 391 PANTHER UNKEMPT FAMILY MEMBER 58 391 IPR045234 -
Pte9g00086 391 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Pte9g00086 391 SMART c3hfinal6 175 198 IPR000571 GO:0046872
Pte9g00086 391 MobiDBLite consensus disorder prediction 365 391 - -
Pte9g00086 391 FunFam Zinc finger CCCH domain-containing protein 66 98 166 - -
Pte9g00086 391 MobiDBLite consensus disorder prediction 244 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00086 Pte-Chr9 882460 885408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00086 80 259 C2H2 Transcription Factor Family AT5G12850 50.769 1.14e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte9g00086 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00086 - - qsa:O6P43_003933 596.66