Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00070 ATGGGTCGCAGCATAGTTGAAGCAGTTTTAGAATTCACTAGAGGCATGGAGATGGCATTCGACCTTGACGAAGTTCTTGCTGTGGCTGAGGGATCATGTCGTAGAATGGCAGCAACCAAGTCCTATGTATCAAACTTGCCCACTGTTGTTTTTCCTGCGGATCATGATGTTTGCTCCGTTTGCATGGAGGGTTTCCAGCAGAAACTACAGTCAGTAGAAGAACAAGCAGGTGACAGCAATAAACGAGTTCCATGTGGTCATCTCTACCATGCCACCTGCATCACTACATGGCTTTCCCTCTTCAACACTTGCCCTCTCTGCCGGAGCAAATTCCAGCTAGACTTTGATTATGAATGA 357 0.4678 MGRSIVEAVLEFTRGMEMAFDLDEVLAVAEGSCRRMAATKSYVSNLPTVVFPADHDVCSVCMEGFQQKLQSVEEQAGDSNKRVPCGHLYHATCITTWLSLFNTCPLCRSKFQLDFDYE* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00070 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Pte9g00070 118 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 37 109 - -
Pte9g00070 118 ProSiteProfiles Zinc finger RING-type profile. 58 108 IPR001841 -
Pte9g00070 118 SMART ring_2 58 107 IPR001841 -
Pte9g00070 118 Pfam RING-H2 zinc finger domain 56 108 IPR024766 GO:0008270
Pte9g00070 118 SUPERFAMILY RING/U-box 53 114 - -
Pte9g00070 118 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00070 Pte-Chr9 732197 732947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00070 17 118 C3H Transcription Factor Family AT5G01980 41.818 4.46e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00070 K22378 - qsa:O6P43_003971 132.88