Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00057 ATGAATCAATTCGCATTTCTCTTTTTGCTTCTCAATGTTTTGATTTTCCATGTCAATGGCCAACCTATCATGGATTCACCTCCCGGAGGTCCAGTCCACAGTTTTCAACCAAGCCTTGCTGTTGTCATAGGAATCCTCTGTGTCATGTTTGCTCTCACTTTTATTCTTCTCATATATGCAAAATTCTGCCACAGGAATCGTTCAACATCTGTAGGGGTTCTGGAAAATCGCCCCCCATTTCTACTTTCAAGGTCTAGACGATATTCCGGTATTGATAAGACCGTCATAGAATCTCTTCCTTTCTTTAGATTTTCTTCACTACGAGGAACAAGAGAAGGGTTAGAATGTGCAGTTTGCTTATCTAAATTTGAGGATATTGAAATCCTCAGGTTGCTGCCTAAATGTAAACATGCCTTTCATATTGATTGCATAGACCATTGGCTTGAAAGTCACTCAAGCTGTCCTCTTTGTAGACAAAAGGTCAGTGCTGAAGATCCGACCATTTTTACTTATTCGAACAGTTTGAGGTTCTTGTCTAATCAATCAGACGTGAGAGAGGATTCCAACGTAGAACTGTTTGTTCAGAGAGAAGAAGATCATGGGGGGTCTTCACGGTTCTGCATAGGCAGCAGTTTTAGGAAAACTGAAAAGGGTGATGGGGATTTGGATAGAGAATCACTGGTTCAGAAAGAAGTTGACCATCTTGATGACAACGATGAGAAATTCTTGCATAAACATAATCACAAGATTATTGTGTCTGATTTTGTTTTCAAGAACAGATGGAGCTGTGTGAGCTCTTCAGATATGATATTCTTGAATTCTGAGATGCTTAATGTTACTTCAAGCAGTAGATTCTCTCACATGGATTTTGGTGAGGAGCAAATAGCATCATCAAGACCAATAGAGAGTGAGGAAATCCAGAATATTAAAGAAGAGATCGAAAGGAAAAGATTGTTCGAAAGTAAAGTGAGTGCACTCAACAAAACCAGTCCAGATTTGGATTCTGCAGGTCTTCCAGCATCTTCCTCAGATCCTGCAAAAAGTTCGAAGTTCAAGAATCCAGCTGAGAAGAGATCAATGTCTGAAATCACAGCCATCTCCAGATTTGGAGACATAGGCATGAAAAGGGAACTTCTCCATGAAAAATTATCGGTTGAAAACAATGCAAAAGAGGCAAGAGTTAGACAGCTGTGGTTGCCAATTGCCAGAAGAACAGTTCAATGGTTTGTCAATAGAGAAAGAAGGGCTCAGCAGTCTCAACAGACACTGCAACCATTTCATGTATAG 1287 0.4009 MNQFAFLFLLLNVLIFHVNGQPIMDSPPGGPVHSFQPSLAVVIGILCVMFALTFILLIYAKFCHRNRSTSVGVLENRPPFLLSRSRRYSGIDKTVIESLPFFRFSSLRGTREGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLESHSSCPLCRQKVSAEDPTIFTYSNSLRFLSNQSDVREDSNVELFVQREEDHGGSSRFCIGSSFRKTEKGDGDLDRESLVQKEVDHLDDNDEKFLHKHNHKIIVSDFVFKNRWSCVSSSDMIFLNSEMLNVTSSSRFSHMDFGEEQIASSRPIESEEIQNIKEEIERKRLFESKVSALNKTSPDLDSAGLPASSSDPAKSSKFKNPAEKRSMSEITAISRFGDIGMKRELLHEKLSVENNAKEARVRQLWLPIARRTVQWFVNRERRAQQSQQTLQPFHV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00057 428 SUPERFAMILY RING/U-box 95 164 - -
Pte9g00057 428 MobiDBLite consensus disorder prediction 330 358 - -
Pte9g00057 428 FunFam RING-H2 finger protein ATL43 91 165 - -
Pte9g00057 428 Coils Coil 375 395 - -
Pte9g00057 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 166 IPR013083 -
Pte9g00057 428 CDD RING-H2_EL5-like 115 158 - -
Pte9g00057 428 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Pte9g00057 428 MobiDBLite consensus disorder prediction 330 349 - -
Pte9g00057 428 Pfam Ring finger domain 115 158 IPR001841 -
Pte9g00057 428 SMART ring_2 116 157 IPR001841 -
Pte9g00057 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00057 Pte-Chr9 639528 640814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00057 4 429 C3H Transcription Factor Family AT4G28890 46.121 5.90e-114 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00057 K10664 - qsa:O6P43_003989 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00057 9 639528 640814 Pte9g00057 9 639528 640814 RCT