Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00011 ATGAAGATCAAGAAGAAGACACCATACCAACTTCAAGAGCTGAATAAGCTCTATTTGGAGGAGAAGTACCCTTCACAGCTGGCAATGGATGACTATGCATCAACTTTGGGATTGACTTGCAAGCAGGTCCGAGATTGGTTTGTTGAGAAAAGGAGGAGAGAGAAAAGGGAAAATGGGACACTTTTACCACTATGTTCTGTTTCACCGAAGAAGCTCTCAAATTTCAATGATAGAAATGTTTTGGGAGTTGCGGTTGCCAAACAAATTCATAAAAGAAGATTGCCTGTTCAGGAAGCTTATACTCAATCATTTTCAAGATATGCAACGGCTAGGTCCAGAGATGCTAAGAAAAGTCAGATTAACAGTTGCCTTCAGGATTTGTTGACACCTGAGTTCATTCTAAAGAAGGTATTTCGAAAGGATGGTCCTCCCCTTGGCTTGGAGTTTGATAAAATTCCTTTTAGAGAATTCTGCAGTCCTACAGATGCAAGAAATTCTACTCCTGCCTGTCAAGAGGATCAAGGACCATCCAAGAGGAGGAAGGTCCCAATGCAAGCACTCATAAATGATGATGGTTCTGCTAGGAAGTCTCCAACGAAGAGCCATGGTTTAGGGAAAGGACTGATGACAGTTTGGCGAGTGACCAATCCAAACGCCAGAGACTTACCTTCTATCTTTTTTTCTGATAAAGAAATTTCTGGATTGAGTATAGCGTCCAAACCATCGTCAAAAAAGTCTTCACGCAGTCGCAAACAGACACAAAAACCCGTAGCTGGAAATGTAAATTCCTCCCAGAGTCATATATATATCAAAACTGTGAATAAGAAGCACTTCCCAAAAGAGAAATGTAAACTTTCTCTAAATAAAGAAATATTCCTAGAGCAACTTAACCGAGTTGCACTGCTAATTGATGATGAGGAACTTGAACTGGAGGAGTTACAAGGAGGATCGTACTCCCAAATGCACTGTGATCATTTATCTACCAGTAGAGAGCATGGTTGTTTGCTTTGCAAAGATGTGCTGGCTAAGTTCCCTCCAAATTCTGTTAAGATGAAGAAGCCCATCTGCATGCAACCATGGGATTCGTCTCCAGAAATTGTTAAGAAACTGTTTAAGGTTTTCCATTTTCTTTATACATATGCTACAGTTGTCGACATATGTCCTTTCACTCTTGATGAATTTGTCCAAGCATTTCATGATAAGGACTCAATGTTGCTTGGGCAAATTCACGTGACCCTTATCTCGCTTCTACTCCATGATGTTGAAGTAGAAATTAACAATGGAAATTTGGCATATCTAAATAAATCTTGCAATTTTCTGGCATTAATTCAGTCGCTTGAAAACAAAGAATATTCTTTGGATTTCTGGAGAAGATCTCTAAATTCCCTTACATGGATAGAAATACTGCGTCAAGTATTGGGTGCTGCTGGTTTTGGTTACAAACATGGTACATTGAGAAGAGAGGCTGCCAGCAAGGATATGGATCTTTTGGTAAAATATGGTCTGCATCCTGGCACATTGAAGTGCACTTTGTTCAAAATTTTATCAGAGCATGGAAACAATGGTTCCAAAGTGTCTGACTTGGCAAAATCAATGCAGGTGGTGGAACTAAATCTTGCTAGCTCAACTGAAGAAGTAGAGCATTTGATATGTTCTACTCTGTCAAGTGATATAAGTCTGTTTGAAAAGATTTCATCCTCAGCTTATCGTCTACGAATGAGTGTTATTTCAAGGGATGCAGATGATTCCCTATCAGATACAGAAGATGCCGGGAGTGTTGACGACGGACTGAATGACTGCGGCACTGATGATGAGTGTGCTTTAAATTCAGAAAGCTTCCATTCAAAAATTTCAAAGCCTAAGCACTGGCGAAGTAAAAACAACATGCTCACTCTGCAGACTGAAATTGATGAGAGTCATCCTGGAGAGGTATGGCTGTTGGGGCTGATGGAAGGAGAATATTCTTCTTTGAGCATTGAAGAGAAGCTGAATGCCTTAGTGGCTCTTACTGATCTTCTTTCTGCTGGTTCCAGCATTAGGGAGAAGGATCCATCAAAAACTTTGACAGACTGCAATTCTGGCACCCGCTATTGTGGATCTGGAGCAAAAATAAAGAAGTCATTGCTAAAGCAACCAAGCTTGCCTGGGTCATTCAAAAGTTTGATTGACCATATTTATGGAGTTAAAGAAGCATACTCGTCATTAACTTCTCACCCGTATCCTGTTGATTCATCATTGTTGGTCTCCAACGTTAATGGCGATCTGCTATCCTTGAGTAATGAACTGCAGGCAAAAGAAGCTGATTCTCTTGATGCCCACCCTATCCAATCTGTGTTTTTGGGATCTGATCGTAGATACAACAGATACTGGCTTTTCTTGGGTCCTTGTGATGTTGATGACCCTGGTCACAGAAGGATCTACTTTGAATCTTCAGAAGATGGTCACTGGGAAGTGATTGATACTGAAGAGGGGTTGTGTACCCTTTTGTCAGTTTTGGACGGTAGGGGAAAACGTGAGGCTTTGCTTATTGACTCTTTAGGAAAGCGACAAGAATATCTCTGCCAGGCAATGTCAAGGACACTGGTAAATGGTGCTGGGCATGTTACACCATATAATTGGCCAGAGGTCGACTTGGTCACTGATGATAGTTATTCTCCAGTCTCTGATGTCGACAACCTTAGCCTGTCTGAGATCGTCAAAGATTCTTTACCTTCAGCTGGAGCTGTTGTACTGGGAGTTGGAAATAAGGGGGAAGAACAAATAAAAAGCTGGATTCGTCTCCAAGCATTTGATTCTTGGATATGGAGTTCATTTTACTTGAATCTCAATGTTGTAAAATATGGTAGAAGGTCATATCTTGATTCTTTTGCTAGATGTGAGAGTTGTCATGATTTGTACTGGCGAGATGAGAAGCACTGTAGAATTTGCCATACTACATTTGAGCTTGATTTTGGCCTAGAAGAAAGGTATGCCATTCATGCAGCTACTTGTAAGGATAAAGATGGCAACACATTTCCAAAGCACAAAGTCTTATCGTCTCAGACCCAGTCGCTTAAAGCTGCCATTTATGCAATTGAGTCTGTTATGCCTGACGACGCTCTGGTGGGTGCTTGGAGAAAGTCTGCTCATAAGCTTTGGGTCAGAAGACTTAGACGTACCTCATCTTTGGTCGAGCTTCTGCAGGTTCTTGCTGATTTTGTTGGGGCCATCAATGAGGATTGGTTACATCGCTGCAACTTCCCTCATCGTGTTGTTCAAGAAGTTATTGTATCGTTTACGTCTATGCCCCATACAACATCTGCCCTTGCACTATGGCTGGTCAAATTGGATACCATAATTACTCCGTACTTAGAAAAAACACATGGTTAA 3369 0.4114 MKIKKKTPYQLQELNKLYLEEKYPSQLAMDDYASTLGLTCKQVRDWFVEKRRREKRENGTLLPLCSVSPKKLSNFNDRNVLGVAVAKQIHKRRLPVQEAYTQSFSRYATARSRDAKKSQINSCLQDLLTPEFILKKVFRKDGPPLGLEFDKIPFREFCSPTDARNSTPACQEDQGPSKRRKVPMQALINDDGSARKSPTKSHGLGKGLMTVWRVTNPNARDLPSIFFSDKEISGLSIASKPSSKKSSRSRKQTQKPVAGNVNSSQSHIYIKTVNKKHFPKEKCKLSLNKEIFLEQLNRVALLIDDEELELEELQGGSYSQMHCDHLSTSREHGCLLCKDVLAKFPPNSVKMKKPICMQPWDSSPEIVKKLFKVFHFLYTYATVVDICPFTLDEFVQAFHDKDSMLLGQIHVTLISLLLHDVEVEINNGNLAYLNKSCNFLALIQSLENKEYSLDFWRRSLNSLTWIEILRQVLGAAGFGYKHGTLRREAASKDMDLLVKYGLHPGTLKCTLFKILSEHGNNGSKVSDLAKSMQVVELNLASSTEEVEHLICSTLSSDISLFEKISSSAYRLRMSVISRDADDSLSDTEDAGSVDDGLNDCGTDDECALNSESFHSKISKPKHWRSKNNMLTLQTEIDESHPGEVWLLGLMEGEYSSLSIEEKLNALVALTDLLSAGSSIREKDPSKTLTDCNSGTRYCGSGAKIKKSLLKQPSLPGSFKSLIDHIYGVKEAYSSLTSHPYPVDSSLLVSNVNGDLLSLSNELQAKEADSLDAHPIQSVFLGSDRRYNRYWLFLGPCDVDDPGHRRIYFESSEDGHWEVIDTEEGLCTLLSVLDGRGKREALLIDSLGKRQEYLCQAMSRTLVNGAGHVTPYNWPEVDLVTDDSYSPVSDVDNLSLSEIVKDSLPSAGAVVLGVGNKGEEQIKSWIRLQAFDSWIWSSFYLNLNVVKYGRRSYLDSFARCESCHDLYWRDEKHCRICHTTFELDFGLEERYAIHAATCKDKDGNTFPKHKVLSSQTQSLKAAIYAIESVMPDDALVGAWRKSAHKLWVRRLRRTSSLVELLQVLADFVGAINEDWLHRCNFPHRVVQEVIVSFTSMPHTTSALALWLVKLDTIITPYLEKTHG* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00011 1122 Gene3D - 1 61 - -
Pte9g00011 1122 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Pte9g00011 1122 SMART HOX_1 1 61 IPR001356 GO:0003677
Pte9g00011 1122 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 3 182 IPR044977 GO:0006357
Pte9g00011 1122 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 776 849 IPR028941 -
Pte9g00011 1122 ProSiteProfiles DDT domain profile. 364 423 IPR018501 -
Pte9g00011 1122 Pfam Homeodomain 7 56 IPR001356 GO:0003677
Pte9g00011 1122 CDD homeodomain 5 58 IPR001356 GO:0003677
Pte9g00011 1122 SUPERFAMILY Homeodomain-like 5 57 IPR009057 -
Pte9g00011 1122 Pfam DDT domain 367 420 IPR018501 -
Pte9g00011 1122 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 641 681 IPR028942 -
Pte9g00011 1122 MobiDBLite consensus disorder prediction 160 182 - -
Pte9g00011 1122 SMART testlast3 364 423 IPR018501 -
Pte9g00011 1122 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00011 Pte-Chr9 254642 264641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00011 302 1080 Homeobox Transcription Factor Family AT5G44180 26.449 1.51e-65 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte9g00011 WSD 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00011 - - qsa:O6P43_019620 1371.3