Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01312 ATGTCTCAGACTAACTGGGAAGCTGATAAAATGTTGGATGTGTATATTCATGATTATCTCGTGAAAAGGGATTTGAAGGCTTCGGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCTTCAGATCCAGTTGCTATTGATGCTCCTGGAGGTTTTTTATTTGAATGGTGGTCTGTTTTTTGGGATATATTCATTGCCAGGACAAATGAGAAACATTCAGAGGCAGCAGCATCTTATATTGAGACTCAGTTAATTAAGGCACGGGAACAGCAACAGCAGCAGCAGCAGCCACATTCCCAACAATCACAACATCAACAGCAGCAGCAGCAGCAGCAGCACTTGCAGATGCAGCAACTCTTATTGCAGAGGCACGCTCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACCACAGTCACAGCCACAGCCACAGCAACAGCAGCAGTCACAGTCACAGCCACAACAACAGCAACGAAGAGATGGGGCTCATTTACTTAATGGAAACACCAATGGGCTAATTGGAAATGAATCTCTCTTGAGGCAAAATTCTGCCACAGCAAATGCATTGGCTGCAAAGATGTATGAGGAAAGGTTAAAACCGCCCATGCAGAGAGATTCCTTAGAAGACGCAGCAATTAAGCAAAGATTTGGTGAGAATGTGGGTCAACTCCTGGATCCCAATCACGCATCAATATTAAAGTCAGTTGCTGCCTCTGGACAGGCTTCAGGACAAATTCTGAATGGTGCTGGAGGTGGTATGTCTGGACATGTCCAAGCTCGTAGTCAGCAACTGCCTGGACCAACTGCAGATATAAAGAATGAGATGAATACAGTCTTAAATCCACGAGCCGCAGGTCCTGATGGTTCACTAATAGGAATTCCTGGATCAGATCAAGGTGGTAACAATTTGACACTAAAAGGCTGGCCACTTACAGGATTAGATCATCTTCGTTCTGGGCTTCTTCAGAAACAAAGGCCATTTATACAGGCTCCTCAGCCTTTTCACCAACTTCAGATGTTGACACCACAACACCAACAGCAGATTATGCTTGCGCAGCAAAATTTGGCATCTCCTTCTAACAGTGAGGAAAATAGAAGACTAAGAATGCTGTTAAGCAATCGAAGTATGAGTCTTGGAAAGGATAGTCTCTCAAACCCTGTCGGAGATGTGGTTCCTAATATCGGGTCACCTCTTCAACCTGGTGGTCCTCTGTTACCTAGAGGAGACACAGATATGCTGATTAAGTTGAAGATGGCTCAATTACAGCAACAGCAGCAGCAACAGTGCGGCAACCAACATCAGCAGCAGCTTCAGCAGCATGCTCTTTCAAGTCAGCAAGTTCAGAGTTCAAATCACAATATGCATCAACAAGATAAAATGGGTGGTGGTGGAAGTTCCAATATTGATGGTAGCCTGTCTAATTCCTTTCGTGGGAATGATCAGGTTTCCAAAAACCAGACTGGAAGGAAGAGAAAACAACCAGTGTCATCTTCAGGCCCTGCCAATAGCTCAGGAACGGCAAACACTGCTGGTCGCTCCCCAAGTTCAGCACCGTCAACACCTTCGACTCACACTCCTGGCGATGTTTTATCGATGCCTGCCTTGCCCCATAGTAGCAGTTCATCAAAGCCTTTGATGATGTTTGGCTCTGATGGATCTGGTACTCTTGCATCACCTTCAAACCATTTGTGGGATGAAAAAAATCTTGAATTGCAGGCTGATATGGATCGTTTTGTAGAGGATGGATCTCTTGATGATAATGTAGAGTCTTTTTTGTCCCCTGATGAAATTGATCCCAGAGAAAAAGCCTTTTCATTTACAGAAGTAAATTCTGTGCGAGCAAGCTCAAGCAAAGTTATTTGTTGCCACTTTTCATCGGATGGAAAATTGCTTGCTACTGGTGGACATGATAAGAAGGCTGTATTATGGTACACTGATTCACTGAAGACGAAAACTTCACTTGAAGAGCATTCATCTTTAATCACTGACGTGCGATTCAGTCCGAGCATGGCACGACTTGCAACATGTTCATTTGATAAAACTGTCCGAGTATGGGATGTTGAGAATCCTGGTTATTCACTTCGAACTTTTACTGGACATTCAGCAACCGTCATGTCACTAGACTTCCATCCAAATAAAGATGACCTCATATGTTCATGTGATGGTGATGGAGAGATTCGATATTGGAGTGTAAATACTAGCGGCTGTGCCAGGGTCTTTAAGGGTGGGACGGCGCAAATGAGATTTCAACCCCGTCTTGGGAGATACCTTGCTGCAGCAGCTGAGAATGTTGTCTCAATTCTTGATGTGGAGACGCAGGCTTGCTGCTATTCCTTACAGGGACACACTAAGCCAATCCATTCTGTATGCTGGGATCCTTCTGGAGAGTTTCTAGCATCTGTAAGTGAGGACTCTGTCAGAGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTAAGTTGCAGTGGAAATAAGTTCCACTCGTGTGTTTTCCACCCAACATATGCTTCATTACTGGTCATCGGCTGTTACCAGTCTCTGGAACTTTGGAATACGACAGAAAATAAGACTGTTACTCTCTCAGAAGCTCATGAAGGACTCATTGCTGCCCTGGCGGTATCAACTGTGACAGGTTTGGTTGCTTCAGCAAGTCATGACAAATTAGTGAAGCTTTGGAAGTAG 2694 0.4465 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAASYIETQLIKAREQQQQQQQPHSQQSQHQQQQQQQQHLQMQQLLLQRHAQQQQQQQQQQQQPQSQPQPQQQQQSQSQPQQQQRRDGAHLLNGNTNGLIGNESLLRQNSATANALAAKMYEERLKPPMQRDSLEDAAIKQRFGENVGQLLDPNHASILKSVAASGQASGQILNGAGGGMSGHVQARSQQLPGPTADIKNEMNTVLNPRAAGPDGSLIGIPGSDQGGNNLTLKGWPLTGLDHLRSGLLQKQRPFIQAPQPFHQLQMLTPQHQQQIMLAQQNLASPSNSEENRRLRMLLSNRSMSLGKDSLSNPVGDVVPNIGSPLQPGGPLLPRGDTDMLIKLKMAQLQQQQQQQCGNQHQQQLQQHALSSQQVQSSNHNMHQQDKMGGGGSSNIDGSLSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGRSPSSAPSTPSTHTPGDVLSMPALPHSSSSSKPLMMFGSDGSGTLASPSNHLWDEKNLELQADMDRFVEDGSLDDNVESFLSPDEIDPREKAFSFTEVNSVRASSSKVICCHFSSDGKLLATGGHDKKAVLWYTDSLKTKTSLEEHSSLITDVRFSPSMARLATCSFDKTVRVWDVENPGYSLRTFTGHSATVMSLDFHPNKDDLICSCDGDGEIRYWSVNTSGCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACCYSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCSGNKFHSCVFHPTYASLLVIGCYQSLELWNTTENKTVTLSEAHEGLIAALAVSTVTGLVASASHDKLVKLWK* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01312 897 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Pte8g01312 897 Pfam WD domain, G-beta repeat 775 809 IPR001680 GO:0005515
Pte8g01312 897 Pfam WD domain, G-beta repeat 651 686 IPR001680 GO:0005515
Pte8g01312 897 Pfam WD domain, G-beta repeat 613 643 IPR001680 GO:0005515
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 653 IPR001680 GO:0005515
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515
Pte8g01312 897 MobiDBLite consensus disorder prediction 534 553 - -
Pte8g01312 897 MobiDBLite consensus disorder prediction 431 527 - -
Pte8g01312 897 Pfam LisH 10 36 IPR006594 GO:0005515
Pte8g01312 897 SMART WD40_4 733 769 IPR001680 GO:0005515
Pte8g01312 897 SMART WD40_4 605 644 IPR001680 GO:0005515
Pte8g01312 897 SMART WD40_4 690 730 IPR001680 GO:0005515
Pte8g01312 897 SMART WD40_4 816 855 IPR001680 GO:0005515
Pte8g01312 897 SMART WD40_4 647 686 IPR001680 GO:0005515
Pte8g01312 897 SMART WD40_4 772 810 IPR001680 GO:0005515
Pte8g01312 897 SMART WD40_4 857 897 IPR001680 GO:0005515
Pte8g01312 897 Gene3D - 593 747 IPR015943 GO:0005515
Pte8g01312 897 FunFam Transcriptional corepressor LEUNIG 740 897 - -
Pte8g01312 897 MobiDBLite consensus disorder prediction 431 553 - -
Pte8g01312 897 SMART Lish 8 40 IPR006594 GO:0005515
Pte8g01312 897 SUPERFAMILY WD40 repeat-like 605 897 IPR036322 GO:0005515
Pte8g01312 897 CDD WD40 608 897 - -
Pte8g01312 897 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 733 - -
Pte8g01312 897 MobiDBLite consensus disorder prediction 128 174 - -
Pte8g01312 897 Coils Coil 115 135 - -
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Pte8g01312 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pte8g01312 897 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 897 - -
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Pte8g01312 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 819 IPR001680 GO:0005515
Pte8g01312 897 MobiDBLite consensus disorder prediction 88 114 - -
Pte8g01312 897 Gene3D - 748 897 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01312 Pte-Chr8 36995441 37003067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01312 691 896 Miscellaneous Gene Families AT5G08390 25.714 5.01e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pte8g01312 WD40 8.9e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01312 - - twl:119996625 1194.1