Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01307 ATGGATGTTTGCTCTACTGAATTGCATTCTGAAAGTTTAGCCGACTCTTATCCTTTGCTAATGGAACCACGGGATAGCCATCACAACAGTGACCACATCATTGACATATCAGGAAGTGGTGAGGCCTCCATATCCAGTTCTCCTCATGATAGAAATCACGACGCCATAGATAGATCACAGCATGAACACGGACCTTCAATAAGTGAAAGATTACCCGCTTCTAATCCTCAAGTTTCTTCAAACATATCTAACGGAACAAATTCTAGAAATTCATCGTCAGTGAGACGAGGGGATGCACGCAGGCGCACAAGTCCATTGAATTCTGGCCTTTGGATTTCCATTGAACTGATTGTTACAGTTAGCCAAATCATTGCATCTATTATGGTTCTGTCTCTGTCAAGAAATGAGCATCCACACACACCCTTGTTTGCATGGATTGTTGGTTATGCATCTGGATGTGTTGCTAGCCTCCCTGTTCTTTATTGGCGATATCATCAACATAACCTTGCACCAGAACGATCTACACCTCAACCACGTCAAACTTCTCAGATAAATGTTCCTGCGGGGCCCTTTTCTCTGTCAGTTACTAGAACTGAAGAAGATCATCAGACTGTTGCTGCCTCATCACCCAGAAACAGACATGGTTTGTTGTCTCTAAATGCAAGGTTCAATGTACTGGTTGAATACTTCAAAATGGGCTTAGATTGCTTCTTTGCCGTGTGGTTTGTTGTGGGCAATGTGTGGATTTTTGGGGGGCACACTTCTCCTGACGAGGCTCCTAACCTGTACAGGTTGTGTATAGTGTTTCTTACCTTTAGCTGTATTGGATATGCTATGCCCTTCATTCTATGTGCAACAATCTGTTGTTGTCTGCCTTGTATAATTCAAATCCTTGGGCTGAGGGAGGATCCACAGACGAGAGGAGCCACATCTGAATCTATAAATTCTCTACCAACATATAAGTTCAAGTTGAAAACCAAAAACAATGATGAAAGCAACTCCAGTGTTAGTGAAGGAGGTATTGTGGCTGCTGGGACTGAAAAGGAGCGAGTGATCTCCGGGGAAGATGCAGTTTGCTGCATCTGCTTAGTAAAATATGAAAACAATGATGAATTAAGAGAGTTGCCTTGCTGTCACTTATTCCACAAAGAATGTGTAGACAAGTGGTTGAAGATTAATGCACTCTGTCCTCTTTGCAAAAGTGAAGTTGGTGAAAGCACTGCAGAATCAGCTTCAGGGGGAAATGCCATCCAGTAG 1257 0.4288 MDVCSTELHSESLADSYPLLMEPRDSHHNSDHIIDISGSGEASISSSPHDRNHDAIDRSQHEHGPSISERLPASNPQVSSNISNGTNSRNSSSVRRGDARRRTSPLNSGLWISIELIVTVSQIIASIMVLSLSRNEHPHTPLFAWIVGYASGCVASLPVLYWRYHQHNLAPERSTPQPRQTSQINVPAGPFSLSVTRTEEDHQTVAASSPRNRHGLLSLNARFNVLVEYFKMGLDCFFAVWFVVGNVWIFGGHTSPDEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIIQILGLREDPQTRGATSESINSLPTYKFKLKTKNNDESNSSVSEGGIVAAGTEKERVISGEDAVCCICLVKYENNDELRELPCCHLFHKECVDKWLKINALCPLCKSEVGESTAESASGGNAIQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01307 418 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Pte8g01307 418 MobiDBLite consensus disorder prediction 70 93 - -
Pte8g01307 418 MobiDBLite consensus disorder prediction 21 104 - -
Pte8g01307 418 SUPERFAMILY RING/U-box 351 406 - -
Pte8g01307 418 SMART ring_2 359 399 IPR001841 -
Pte8g01307 418 MobiDBLite consensus disorder prediction 47 65 - -
Pte8g01307 418 Pfam Ring finger domain 359 400 IPR001841 -
Pte8g01307 418 FunFam E3 ubiquitin-protein ligase 342 409 - -
Pte8g01307 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 415 IPR013083 -
Pte8g01307 418 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01307 Pte-Chr8 36916097 36920120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01307 1 411 C3H Transcription Factor Family AT1G80400 50.463 2.03e-149 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01307 - - qsa:O6P43_015633 591.652