Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01305 ATGCATATGAAAACGGCACAGTCTTCGTTTCGTGATCGGACGCAGGAGTTCGAAGGAATCGCAGAGAGGTTAAGGAAGTCGGTCTCGTCTGGGTTAGGACCTAATGGACCCAGTAGCAGTTCAAAATCGGAGGAGCCAAGATCGGCTATGGTGCTTCAGTCTGAATTTAATAGGAGGGCTTCCAAGATTGGTTATGGGATACATCAGACTTCACAGAAGCTAGCTAAGCTGGCCAAGTTGGCGAAGAGAACATCAGTATTTGATGATCCCACTATGGAAATCCAAGAGCTTACAGCAGTGATTAAGCAGGACATCACTGCACTAAACTCTGCTGTAGTGGATCTTCAGTTACACTGCAACTCAAGAAATGAGAGCGGAAGTATTTCAACTGACACAACAAGCCATTCAACCACAGTTGTGGATGACCTAAAAAATCGTCTAATGAGCACCACAAAAGAGTTCAAGGAGGTGCTTACAATGCGCACAGAGAATTTGAAAGTCCACGAGAACAGAAGGCAGCTGTTCTCTTCCACTGCTTCCAAGGATTCTGCTAATCCTTTTGTTCGTCAACGCCCCTTGACCGCACGGTCAGCTGCTAGCGCTTCCAATGCTCCTCCTTTACCATGGGCAAATGGATCATCATCTCCATCTCAATTGCTCCCCAATAAGCAGGCAGATGGGGAGAGCCAACCTCTGCTGCAGCAACAGCAACAGCAACAGATGGTCCCATTGCAAGATAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAACTGAGCAGCATCTTTAACCAGCTGGCGACACTTGTTTCTCAGCAAGGAGAAATTGCCATCAGGATTGATGAGAACATGGATGATACGCTTGCAAATGTGGAAGGGGCACAAGGAGCTCTGCTGAAGTATCTGAACAGCATTTCCTCCAATAGGTGGCTTATGATCAAGATATTCTTTGTACTGATTTTTTTCCTTATGGTATTCCTATTTTTTGTGGCATAG 1017 0.4562 MHMKTAQSSFRDRTQEFEGIAERLRKSVSSGLGPNGPSSSSKSEEPRSAMVLQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLHCNSRNESGSISTDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKDSANPFVRQRPLTARSAASASNAPPLPWANGSSSPSQLLPNKQADGESQPLLQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01305 338 CDD SNARE_syntaxin5 249 327 - -
Pte8g01305 338 Pfam SNARE domain 282 334 IPR000727 -
Pte8g01305 338 MobiDBLite consensus disorder prediction 1 51 - -
Pte8g01305 338 MobiDBLite consensus disorder prediction 195 237 - -
Pte8g01305 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Pte8g01305 338 SMART tSNARE_6 241 308 IPR000727 -
Pte8g01305 338 Gene3D - 52 301 - -
Pte8g01305 338 MobiDBLite consensus disorder prediction 31 50 - -
Pte8g01305 338 PANTHER SYNTAXIN 50 330 IPR045242 -
Pte8g01305 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte8g01305 338 MobiDBLite consensus disorder prediction 1 23 - -
Pte8g01305 338 MobiDBLite consensus disorder prediction 194 237 - -
Pte8g01305 338 SUPERFAMILY t-snare proteins 53 301 IPR010989 GO:0016020|GO:0016192
Pte8g01305 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01305 Pte-Chr8 36895278 36899778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01305 1 339 SNARE and Associated Proteins AT3G24350 65.934 3.17e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01305 K08490 - qsa:O6P43_019389 471.085