Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01290 ATGATCGGGTTTTGCCTCGATTATCTGGTGCCGTCATTGTGGGAGATCCAAGTCACGATGGCCGCTTCCATATTCATCATCTTAGCCTTTTTGCTTTTTACATACAGAAGCGGAGACACCGATATTGATCGATCCCTCCTGCACAGCAACCCCTCTGCTACTGGGGATGGTGCCGACCATAAAATGGGCCAGTTGAAAGGAGATTCTCATGCCGCTTCTGGTTCCGGATACTTAATTAAGGTCGAACTGCTGGCAGCAAAGAATTTAGTTGGTGCAAATTTAAATGGAACCTCTGATCCTTATGTTATCATTACGTGCGGAACAGAGAAAAGATTCAGTTCAATGGTACCTGGTTCGAGAAATCCTATGTGGGGTGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGCAAAGATTATTGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCCGTTCTTGGTTCAGTTACTGTTCCAATAGAAAATGAAGGCCAAACAGGGGCCATATGGTATACCTTGAACAGCCAATCCGGACAGGTTTGCCTTGATATTAAGACAATAACCTTGCCCCTAAATTACTCAAGGATGAATGGCTTTGCTGGAGCTAATCCTCGAAGAAGGATGCCTTTAGATAAACAGAAGCAGGGGCCAACTGTGGTTCATCAAAAGCCAGGACCACTCCAGACAATATTTAATCTCCTTCCAGATGAGGTTGTGGAGCATTCTTACTCTTGTGCACTGGAGAGATCATTCTTGTACCATGGTCGCATGTTTGTCTCAGCATGGCACATTTGCTTCCACTCCAATGTGTTTTCAAAGCAAATGAAGGTGGTGATTCCATTTCAAGACATAGATGTGATACGAAGGAGTCAGCATGCAGTTATAAACCCTGCTATAACTATCATACTACGCATGGGTGCCGGTGGTCATGGTGTGCCTCCATTGGGAAGCCCTGATGGTCGAGTGAGGTATAAATTTGCGTCATTTTGGAACAGGAATAATGCATTTAGAGGTCTGCAGCGTGCAGCCAAGAATTTCCATTCAATGCTTGAAGTGGAGAAGAAGGAGCGGGCAGAGTCAGCATTGCGTGCACATAGCAGCTCAGTGAATCGAACTAAGGAGCAGGAGAAGGTTCTTGAAGAAATATTGCCTAAAACAGGAAAACTGCAAGCCTTCATCAAAGAGGAAGCTTTGGTTAGCATATACAATGATGTTTTTCCATGTACAGCTGAGCAATTTTTCAACATTTTATTAACTGATGATTCGAATTTCATTAATGAGTATCGATCTGTGCGAAAGGACACAAATCTTGTGATAGGACAGTGGCACTTAGCTGAGGATTATGATGGCCAAGTCAGAGAGATCACATTCAGATCCCTTTGCAACAGTCCTATGTGCCCTCCCGATACAGCTATGACAGAGTGGCAACATGTGGTTTTATCACCGGACAAGAAAAAGCTGGTGTTTGAGACGGTACAGCAGGCACACGATGTTCCATTTGGATCTTACTTTGAGGTACACTGTAGGTGGACAATGGAGACCCAAACAGATACCTCATGTTCTATAGATGTTAAAGCAGGTGCTCATTTTAAGAAATGGTGTGTTATGCAATCTAAAATAAAGTCTGGAGCAATTAATGAGTATAAGAAGGAAGTGGAGGTGATGATAGAGGTGGCTAGGTCTTGTGTAAAGTCAAACACTTCGAGTTCTGAAAGAGACGGGGCTTTTTCCATTCCTCCTATGGAAAACTGTGCTTAA 1764 0.4314 MIGFCLDYLVPSLWEIQVTMAASIFIILAFLLFTYRSGDTDIDRSLLHSNPSATGDGADHKMGQLKGDSHAASGSGYLIKVELLAAKNLVGANLNGTSDPYVIITCGTEKRFSSMVPGSRNPMWGEEFNFSVDELPAKIIVTIYDWDIIWKSAVLGSVTVPIENEGQTGAIWYTLNSQSGQVCLDIKTITLPLNYSRMNGFAGANPRRRMPLDKQKQGPTVVHQKPGPLQTIFNLLPDEVVEHSYSCALERSFLYHGRMFVSAWHICFHSNVFSKQMKVVIPFQDIDVIRRSQHAVINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNNAFRGLQRAAKNFHSMLEVEKKERAESALRAHSSSVNRTKEQEKVLEEILPKTGKLQAFIKEEALVSIYNDVFPCTAEQFFNILLTDDSNFINEYRSVRKDTNLVIGQWHLAEDYDGQVREITFRSLCNSPMCPPDTAMTEWQHVVLSPDKKKLVFETVQQAHDVPFGSYFEVHCRWTMETQTDTSCSIDVKAGAHFKKWCVMQSKIKSGAINEYKKEVEVMIEVARSCVKSNTSSSERDGAFSIPPMENCA* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01290 587 Pfam VAD1 Analog of StAR-related lipid transfer domain 403 548 IPR031968 -
Pte8g01290 587 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 4 577 IPR044655 -
Pte8g01290 587 Pfam C2 domain 79 175 IPR000008 -
Pte8g01290 587 Gene3D - 228 347 IPR011993 -
Pte8g01290 587 PRINTS C2 domain signature 118 131 IPR000008 -
Pte8g01290 587 PRINTS C2 domain signature 94 106 IPR000008 -
Pte8g01290 587 PRINTS C2 domain signature 139 147 IPR000008 -
Pte8g01290 587 ProSiteProfiles VASt domain profile. 399 569 IPR031968 -
Pte8g01290 587 Coils Coil 357 377 - -
Pte8g01290 587 CDD C2 79 175 - -
Pte8g01290 587 SMART gram2001c 227 293 IPR004182 -
Pte8g01290 587 Gene3D C2 domain 63 191 IPR035892 -
Pte8g01290 587 ProSiteProfiles C2 domain profile. 61 175 IPR000008 -
Pte8g01290 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 190 IPR035892 -
Pte8g01290 587 SMART C2_3c 78 184 IPR000008 -
Pte8g01290 587 Pfam GRAM domain 230 296 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01290 Pte-Chr8 36776525 36784024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01290 78 163 C2H2 Transcription Factor Family AT4G21160 29.070 1.56e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01290 - - qsa:O6P43_000030 933.71