Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01277 ATGGACGAGGACAACTCGCCGGATAAGGACGTTGAAGGTGATGGCAAGATCTTGGCATTCGCTAAGATTCTGACGGAGTCCGATGCAAATAATGGCGGGGGATTCTCTGTTCCGCGGTTCTGTGCTGACTCGATTTTCCTGCCACTTAACTTTCAGGATGACCCGTCGGTGCAGACGGTCACAGTGACAGATGTTCATGGCATTGTTTGGGAGTTTAGACACATTTACAGGGGAACGCCGAGAAGGCACTTACTTACTACTGGATGGAGTAAGTTTGTGAATCATAAGAAGTTGGTCGCGGTTGACTCGGTGGTCTTCATAAAGAATTTGAAAGGAGAGATGTTTTTTGGAGTTCGTAGGTCTTTGTGA 369 0.4743 MDEDNSPDKDVEGDGKILAFAKILTESDANNGGGFSVPRFCADSIFLPLNFQDDPSVQTVTVTDVHGIVWEFRHIYRGTPRRHLLTTGWSKFVNHKKLVAVDSVVFIKNLKGEMFFGVRRSL* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01277 122 Pfam B3 DNA binding domain 20 120 IPR003340 GO:0003677
Pte8g01277 122 FunFam Auxin response factor 18 122 - -
Pte8g01277 122 Gene3D - 17 122 IPR015300 -
Pte8g01277 122 CDD B3_DNA 20 120 IPR003340 GO:0003677
Pte8g01277 122 SUPERFAMILY DNA-binding pseudobarrel domain 16 120 IPR015300 -
Pte8g01277 122 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 120 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte8g01277 122 SMART B3_2 20 122 IPR003340 GO:0003677
Pte8g01277 122 ProSiteProfiles B3 DNA-binding domain profile. 20 122 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01277 Pte-Chr8 36640389 36641095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01277 8 121 B3 DNA Binding Superfamily AT1G77850 72.807 8.12e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte8g01277 B3 5.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01277 - - pop:7460924 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g01277 8 36640389 36641095 Pte8g01277 8 36640389 36641095 RCT