Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01229 ATGGGAAGGTCCCCTTGCTGCGACGAGAATGGTCTCAAGAAAGGTCCCTGGACTCCTGAGGAGGATGAAAAGCTTGTCCAGTACATCAGGAAACATGGCCATGGTAGTTGGAGAGCTCTTCCAAAGCTAGCTGGTCTCAACAGATGTGGCAAAAGCTGTAGGTTAAGATGGACAAACTATCTCAGGCCAGACATTAAGAGAGGAAAGTTTTCTCAAGAAGAGGAGCAAACTATTCTTCATCTCCACTCCATTCTTGGAAACAAATGGTCAGCAATTGCAAGCCACCTTCCTGGTCGAACTGACAATGAAATCAAGAATTTCTGGAATACTCATCTCAAGAAGAAACTGATTCAGATGGGTTTTGATCCAATGACTCATCAGCCCAGAACTGATCTCTTTTCCAGCTTGCCTTACTTCCTTGCCTTGGCCAACATGACAGAACTCATGGATTATCATAATCATCAATCATTAGATGAACAGGCTTTGAGATTACAAACCGAGGCTATCCAGTTGACCAAGCTTCAGCATCTTAACTATCTTCTACAGTCATCGACTTCTCTCAACATAAACCCGACGTCGTATGACCTACGCAGCATCACAAACATGGAAGCAGCTTTGAATTTGTTGAACCCAACAATTTCTTCTGTACTGCAGAAAGAGAATTCTATTAATACGAGTCCTTTGCAATATCCGGAGAATAACATGCAGGCTTCATTTTCATTTGAAAATGGAGACTCTCAACCTCAACCACTCCACCATCCAAGCCTACTATCCCACTTTTCAGACCCACAAGTCCCTTTCAGTTTCCAAACATGTTTGAATAATAGTGAGATATTAGGCCAAGCCACTGATTTCAAAATCGTCAGCCAAGGGAATAGCCCATCTGATCATACTGATCATCACTGGGTATCTCCTCCTGCTCCTAGAGTTCCTCCTATTTTGACTGCAAGTCCCCTCAGCAATATTCCAGCAGGAGATGCTAGCAGCAGTAGTTCCAGCTACGGTACTGGAGGAACCTCGTCATCTTATTGGACTCAACTCTTTTTAGACGACATTAATGTCATGCACGAGATTGCTTAG 1080 0.4352 MGRSPCCDENGLKKGPWTPEEDEKLVQYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLFSSLPYFLALANMTELMDYHNHQSLDEQALRLQTEAIQLTKLQHLNYLLQSSTSLNINPTSYDLRSITNMEAALNLLNPTISSVLQKENSINTSPLQYPENNMQASFSFENGDSQPQPLHHPSLLSHFSDPQVPFSFQTCLNNSEILGQATDFKIVSQGNSPSDHTDHHWVSPPAPRVPPILTASPLSNIPAGDASSSSSSYGTGGTSSSYWTQLFLDDINVMHEIA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01229 359 FunFam Transcription factor MYB39 69 130 - -
Pte8g01229 359 CDD SANT 69 112 IPR001005 -
Pte8g01229 359 MobiDBLite consensus disorder prediction 238 254 - -
Pte8g01229 359 SMART sant 13 63 IPR001005 -
Pte8g01229 359 SMART sant 66 114 IPR001005 -
Pte8g01229 359 MobiDBLite consensus disorder prediction 238 257 - -
Pte8g01229 359 CDD SANT 16 61 IPR001005 -
Pte8g01229 359 Gene3D - 11 67 - -
Pte8g01229 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte8g01229 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte8g01229 359 Gene3D - 69 116 - -
Pte8g01229 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte8g01229 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte8g01229 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Pte8g01229 359 MobiDBLite consensus disorder prediction 321 337 - -
Pte8g01229 359 FunFam MYB-related transcription factor 13 66 - -
Pte8g01229 359 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte8g01229 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte8g01229 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte8g01229 359 MobiDBLite consensus disorder prediction 288 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01229 Pte-Chr8 36267639 36268993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01229 1 355 MYB Transcription Factor Family AT1G34670 54.068 6.50e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte8g01229 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01229 K09422 - jre:109006816 454.907