Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01220 ATGACTGGCTTGTTTGGTTCGACCCCTCAAGCAGAGAGGTGTGAAGTACGCAATAGTGTTGATCAAAGGGACGAGGACGTTACTGTGGCCTTGCATATTGGCCTTCCAGATAACTACCCCACTAGTGGTTCTGCACATGCAAAGGGAGATCAGAAATCATCAAACCAAATTGAATTGGCCAAAAATTATTGGATACCAACTTCACAACAAATACTGGTTGGCTTCAGTCTATTTTCTTGTCATGTATGCTTCAAAACCTTCAACCGCTATAACAATCTTCAGATGCACATGTGGGGACATGGATCGCAGTATCGTAAAGGAACAGATGCTTTGAGACGAACTCACCCACGGCCCATGTTTGACATTCCATGCTACTGTTGCGCACAAGGGTGTAAGAACAACATAGACTACCCAAAAGCAAAGCCTCTCAAGGATTTTCGAACACTGCAAACGCATTACAAGAGAAAGCATGGGGTTAAGCCTTTCGTATGTAGAAAATGTGGGAAGCGTTTGGCTGTGAAAGGTGACTGGAGAACCCATGAGAAAAATTGTGGCAAGCGCTGGCTTTGCATCTGTGGTTCCGACTTCAAGCACAAGAGGTCACTCAAAGATCATATGAAAGCTTTTGGTTCACGGCACCACCCTCTTCCTTCTTCGATTTTCTGA 666 0.4474 MTGLFGSTPQAERCEVRNSVDQRDEDVTVALHIGLPDNYPTSGSAHAKGDQKSSNQIELAKNYWIPTSQQILVGFSLFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGTDALRRTHPRPMFDIPCYCCAQGCKNNIDYPKAKPLKDFRTLQTHYKRKHGVKPFVCRKCGKRLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHMKAFGSRHHPLPSSIF* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01220 221 Gene3D Classic Zinc Finger 77 100 - -
Pte8g01220 221 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Pte8g01220 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Pte8g01220 221 SUPERFAMILY beta-beta-alpha zinc fingers 144 182 IPR036236 -
Pte8g01220 221 SMART c2h2final6 188 213 IPR013087 -
Pte8g01220 221 SMART c2h2final6 125 157 IPR013087 -
Pte8g01220 221 SMART c2h2final6 162 182 IPR013087 -
Pte8g01220 221 SMART c2h2final6 78 100 IPR013087 -
Pte8g01220 221 Pfam Zinc finger, C2H2 type 78 97 IPR013087 -
Pte8g01220 221 SUPERFAMILY beta-beta-alpha zinc fingers 69 100 IPR036236 -
Pte8g01220 221 PANTHER ZINC FINGER PROTEIN WIP2 17 216 IPR043584 GO:0003700|GO:0010468
Pte8g01220 221 Gene3D Classic Zinc Finger 140 215 - -
Pte8g01220 221 FunFam Zinc finger protein WIP2 131 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01220 Pte-Chr8 36185443 36186236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01220 27 221 C2H2 Transcription Factor Family AT1G34790 67.476 2.84e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte8g01220 zf-C2H2 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01220 - - ccaj:109809318 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g01220 8 36185443 36186236 Pte8g01220 8 36185443 36186236 RCT