Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01197 ATGGCTCAAACTATAGGTACGCAGTCTCCATTGCAAGGGCAGTCATCGAGGGTCGAGTTTAACAAATCCATGGTGTATATCATTGCCATACTGATCTTCATCTTTTTCATCCTCGGCTTCATCTCCGTGTACACTCGGCGATGTGTTGATAGTCATCTCCGAGCTCATCTTGGTTATCGTAATTTTCCCTTCGGAAACAGTGGCCGCCGCGGCCTTCCACCTCATGTGATCAACACGTTCCCTACTTTTATTTACTCAGCTGTCAAGGGTGTCAAAATTGGGAAGGGCTGTGTAGAATGTGCTGTGTGCTTGAATGTGTTTGGAGAAGATGAAACGCTGCGTTTGATACCCATATGCAATCACGTCTTCCATTCTCAATGCATCGATGTCTGGCTGGGTAGTCACAGCACGTGTCCGGTTTGCAGGGCTGACTTGCTTTCGAAGCATGGAGATAAGGCCTCTGTGGCCATCGCAATTCAGGGTACGGGTCACGAAGCCGGTGAGCCCGATCGAAGATCCGAATTGGATCATGAAATACAAAACCAAGCTATGGCGGGAACGACATCGTTTCCCGGTGGTGACAATCAGAACCGTCTTCCTCGCTCGCGCTCGACGGTTTTCCGGTTTAGTAGTTTGTTTAGTCGGTCACAATCGACGGGTCAATCATCACCGGTTCAAAATCCTAATGAAGATCATGAAAGATTTACGTTAAGATTACCGGAGGAGGCACGGGATCAGTTGGCGAACCATAATCCGAACAGAAACCAGAGCTGCGTGGCGTTGTCCGGGGAGAGTTGTCCGAGGAAAGGGTATAGGAGTGGGGAAGAAGAAAACGAAACAGGAGGGAGGAACGTAGACAACCGGTTCGATCAGGAAGAGCGGGCGGATAAGTGGCGGTTCACATTGGCATCGTCGTTTTTCAATAGAACCGGCTGGAGAGAGACAGATCGTGAGACCGACAAAGAAGCCGCCCTTTGA 978 0.4969 MAQTIGTQSPLQGQSSRVEFNKSMVYIIAILIFIFFILGFISVYTRRCVDSHLRAHLGYRNFPFGNSGRRGLPPHVINTFPTFIYSAVKGVKIGKGCVECAVCLNVFGEDETLRLIPICNHVFHSQCIDVWLGSHSTCPVCRADLLSKHGDKASVAIAIQGTGHEAGEPDRRSELDHEIQNQAMAGTTSFPGGDNQNRLPRSRSTVFRFSSLFSRSQSTGQSSPVQNPNEDHERFTLRLPEEARDQLANHNPNRNQSCVALSGESCPRKGYRSGEEENETGGRNVDNRFDQEERADKWRFTLASSFFNRTGWRETDRETDKEAAL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01197 325 MobiDBLite consensus disorder prediction 248 290 - -
Pte8g01197 325 SMART ring_2 100 141 IPR001841 -
Pte8g01197 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 147 IPR013083 -
Pte8g01197 325 MobiDBLite consensus disorder prediction 213 230 - -
Pte8g01197 325 SUPERFAMILY RING/U-box 94 148 - -
Pte8g01197 325 MobiDBLite consensus disorder prediction 269 290 - -
Pte8g01197 325 CDD RING-H2_EL5-like 99 142 - -
Pte8g01197 325 FunFam E3 ubiquitin-protein ligase ATL6 63 148 - -
Pte8g01197 325 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Pte8g01197 325 Pfam Ring finger domain 99 142 IPR001841 -
Pte8g01197 325 PANTHER RING FINGER DOMAIN-CONTAINING 14 151 - -
Pte8g01197 325 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01197 Pte-Chr8 36014590 36015567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01197 20 316 Rapid Response to Elicitors AT3G05200 38.235 1.07e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01197 K10664 - qsa:O6P43_019600 259.996