Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01160 ATGGTGAGAGAGAAGATTGAGATCAAGAAGATTGACAATATAACTGCAAGGCAGGTAACTTTCTCCAAAAGAAGACGAGGGCTTTTGAAGAAAGCTGCTGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGGAGTCATCGTTTTTTCTTCAACGGGAAAGCTCTATGAGTATGGCAGCTCCAGTATAAAAGATGTGATTACAAGGTATGGTCTCCATTCTAACTCCTCTGGGAAACTGGACCAACCGCCTCTTGGATTTCAGATGGAGCATAGTCATGATCAGTATAGATCACTGACTAAGCAAATTGAGGGGAAAAACCAAGAACTGAGGAGAATGCAAGGAAAGGATCTTCATGGACTTGATATGGATGAACTGCAAAAACTGGAAAAAGTATTAGAAGTAGGACTGAGCCGTGTACACAAGATTAGGGAAGAACGCATAATGACTCAGATTTCTGCACTCGAAAGAAAGGGAGAGGAATTGGTCGAAGAAAACAAGAGGTTGAACCAAAAGATGCTGATGTTGTATGAAAGGAAAAGACCTGCAGTCCTTGTGGACTCAGAGATTGCTGTCCACGAAGAAGGGCTCTCGTCACAGTCCGCCACCCATGCTTGCAGCTGCAACAGTGGTCCTTCTCTCGACGACGATTCCTCTGACACTTCTCTTAAGTTGGGTTAA 678 0.4395 MVREKIEIKKIDNITARQVTFSKRRRGLLKKAAELSVLCDAEVGVIVFSSTGKLYEYGSSSIKDVITRYGLHSNSSGKLDQPPLGFQMEHSHDQYRSLTKQIEGKNQELRRMQGKDLHGLDMDELQKLEKVLEVGLSRVHKIREERIMTQISALERKGEELVEENKRLNQKMLMLYERKRPAVLVDSEIAVHEEGLSSQSATHACSCNSGPSLDDDSSDTSLKLG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01160 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte8g01160 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte8g01160 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte8g01160 225 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte8g01160 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte8g01160 225 MobiDBLite consensus disorder prediction 194 225 - -
Pte8g01160 225 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Pte8g01160 225 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte8g01160 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Pte8g01160 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte8g01160 225 Coils Coil 95 115 - -
Pte8g01160 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte8g01160 225 Coils Coil 151 171 - -
Pte8g01160 225 FunFam Transcription factor, MADS-box 13 83 - -
Pte8g01160 225 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Pte8g01160 225 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pte8g01160 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01160 Pte-Chr8 35719074 35722692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01160 1 225 MADS-box Gene Family AT2G22540 51.477 4.76e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte8g01160 K-box 5.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01160 - - pop:7461823 266.159