Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01147 ATGGCAATTCAGGTATTTCACAGCACTCATTATGCTGGGCTCGATCTAGTAATGAAATTTGGAACTAACGAGACCTGGAAGAAAGTGTACGGCCCAATATATATCTATCTCAACTCTCAGTCCAATGTGAGTGACCCAATCAGTGGGCTTTGGGAGGACGCTAAAGAACAGAAAACGGTTCAAGTGGAGAGTTGGCCCTATAGTTTTCCTGCTTCAGATGATTTTCCTTCGTCTGAACAAAGGGGTCACGTCACCGGAAGAATACTCATTTTTGACAGGTATATCACCGAGGAGTACATTCCAGGTAACAGTTCCTATGTTGGATTAGCACCCATAGGAGATGTCGGATCTTGGCAAAAAGAAAGTAAGGGCTATCAGTTCTGGAGTGTGGCAGATGATCTAGGTGATTTTTCTATTAACAACGTACGTCCTGGAATTTACAACCTTTATGCATGGGTCCCTGGATTCATAGGCGAGTACAGATATCAACAAGTCATAAACATAACCTCAGGTTGTAAAATTGAGATGGGTGATATTGTCTACATGCCGCCCAGAAATGGCACTACACTTTGGGAGATAGGTGTCCCAGATCGTTCTGCTGCTGAGTTCTATGTTCCTCATCCAAATCCAAAATACATCAATAGACTTTATGCCAACCATACTGATAGGTTCAGACAATATGGTCTGTGGGAAAGATATGCAGATTTGTACCCAGATGAAGATTTAATTTATACCATAAACACCAGCAACTATAAAACAGATTGGTTTTTCGCCCAAGTCACAAGGAAGAAATCTAATAACACATATCAAGGAACAACATGGAAAATTCAGTTCGAGCTTGAACATGTGGAAACAAACGGAACCTACACGCTGCAATTAGCACTGGCATCTGTACATGCTTCTGCTTTAGAAGTTAGGATAAATGAGTTGGAATCAAACCCACCTGCATTTTCAACTGGGAAGATTGGGAGAGATAATACAATTGCCAGACACGGGATTCATGGGTTGTATTGGTTGTTCCATGTAGATGTGCAAGGAGATCTTCTGACTGTGGGAAAGAACACTATTTTTCTAACACAGAATGCAACTGGGAGTCCGTTTCAGGGGATTATGTATGATTATATTCGTCTAGAAGCACCACCTTCATATTTCATACAGAGACCTAGCTGA 1170 0.4145 MAIQVFHSTHYAGLDLVMKFGTNETWKKVYGPIYIYLNSQSNVSDPISGLWEDAKEQKTVQVESWPYSFPASDDFPSSEQRGHVTGRILIFDRYITEEYIPGNSSYVGLAPIGDVGSWQKESKGYQFWSVADDLGDFSINNVRPGIYNLYAWVPGFIGEYRYQQVINITSGCKIEMGDIVYMPPRNGTTLWEIGVPDRSAAEFYVPHPNPKYINRLYANHTDRFRQYGLWERYADLYPDEDLIYTINTSNYKTDWFFAQVTRKKSNNTYQGTTWKIQFELEHVETNGTYTLQLALASVHASALEVRINELESNPPAFSTGKIGRDNTIARHGIHGLYWLFHVDVQGDLLTVGKNTIFLTQNATGSPFQGIMYDYIRLEAPPSYFIQRPS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01147 389 CDD RGL4_C 191 378 - -
Pte8g01147 389 Pfam Polysaccharide lyase family 4, domain II 104 174 IPR029413 -
Pte8g01147 389 SUPERFAMILY Galactose-binding domain-like 186 378 IPR008979 -
Pte8g01147 389 Gene3D - 186 378 - -
Pte8g01147 389 Pfam Polysaccharide lyase family 4, domain III 189 377 IPR029411 -
Pte8g01147 389 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 381 - -
Pte8g01147 389 CDD RGL4_M 80 179 IPR029413 -
Pte8g01147 389 FunFam Rhamnogalacturonate lyase B 77 176 - -
Pte8g01147 389 Gene3D - 77 175 - -
Pte8g01147 389 SUPERFAMILY Starch-binding domain-like 78 174 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01147 Pte-Chr8 35485511 35490169 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01147 2 380 Polysaccharide Lyase AT1G09890 62.533 3.29e-180 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01147 K18195 - qsa:O6P43_019547 574.704