Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01145 ATGCCGCAGCTGGGGGTGCAACTAATTATCCAAGACCGCCATGTGGTGATGGACAATGGCATAGCACGAGTCACGCTGTCAAATCCAGAGGGACTAGTTACTGTGGTACAGTACAATGACATCGAGAATTTGCTTGAAGTTTTGAACGAAGAATCAAACAGGGGTTACTGGGATCTTGTTTGGAACTCACCAACTAGTACAGGGACCACTGGGCTATTTGAAGTGATTAGAGGTACTGATTTCAGAGTTGTCGTGCAAAATGAAGAACAGGTTGAGATATCTTTTTCCAGAACATGGGATACGTCCCTTGATGGAAAGCTAGTTCCCTTAAAAATTGACAAAAGGTTTATAATGCTTCGTGGTTCTTCTGGATTCTACTCCTATGCTATCTATGAACACTTGGCTGAATGGCCTGGTTTCAGTCTTGGTGAGACCAGAATCGCTTTCAAGCTCAGCAAAGACAAGTTTCATTACATGGCAATGGCAGACAATAGACAAAGAAACATGCCTCTACCGGACGACCGATTGCCTCCAAGAGGAGAAGTCCTTGCCTATCCAGAGGCTGTTCGGCTTGTAAATCCCAAGGAACCAGAGTTAAAGGGAGAGGTTGATGATAAGTACCAATACTCATGTGACAACAAAGACAGCAAGGTTCATGGATGGATATGCAGAGATCCATCAATTGGGTTCTGGCTTATCACTCCCAGCAATGAGTTCCGATCAGGTGGACCAGTGAAACAGAATCTAACGTCCCATGTGGGACCCACTACTCTTGCGGTGTTTCTAAGCGCTCATTACGCTGGAGAGGATCTGGTACCAAAGTTCCAAGCTGGGGAACCATGGAAGAAAGTTTTTGGTCCAGTGTTTGTTTACCTGAACTCTGCATATGATGGAGACCAAGACCCTGTATATGAACTCTGGGAGGATGCCAAAACTCAGATGATGAATGAAGTGCAGAGCTGGCCTTATACTTTCCCTGCTTCAGAGGATTTTTCCAAGTACAATAAACGTGGTAACGTGAGTGGCAGGTTGCTAGTAAGAGACAGATTCATAAGCGACAAAAACATAGCAGGAAAAGGTGCCTATGTTGGTCTAGCTCCACCTGGAGATTTAGGATCTTGGCAAAGAGAATGCAAGAGCTATCAATTCTGGACCAAAGCAGACGAAGATGGCTACTTCTCTATCAACAATGTACGTACCGGTGACTATAACCTTTATGCTTGGGTGCCAGGGTTTATCGGAGACTACAAGTACAATGATGTAATTAGCATTACTGAAGGTGGGGTTCTCAACTTAGACGACCTCGAGTACGAGCCTCCGAGAAATGGTCCAACACTCTGGGAAATAGGCATTCCTGATCGCACAGCGGCTGAGTTCTTTGTTCCTGATCCCAGCCCAAGATATGTCAACAAGCTCTATGCTAATCATCCTGACAAGTTTAGGCAGTATGGTTTATGGGAAAGATATGCAGAACTATATCCTGATAAGGACTTGGTTTACACAGTTGGTATCAGTGACTACTCTAAGGATTGGTTTTTTGCTCAAGTAACCAGCAGGAAGAAAGATAACAATACTTATGAAGGAACAACATGGCAAATCAAGTTTAAACTTGACAGCGTAAATAAGAACAGTGACTATAAACTGCGAGTGGCACTGGCTTCTGCTACCGTCTCTGAACTGCAGGTGAGAGTGAATGATCAGAAGGCAAAGCCTTTGTTTTCAAGTGGACTCATTGGAAAGGATAACTCTATTGCTAGACATGGAATTCATGGGCTTTATTGGCTTTTCAATGTGGATGTGCCTGCTGCTCAACTTGTTGAAGGAGATAACACGATTTTCTTGACACAGTCTAGAGGCAACAGTCCTTTCCAAGGAATTATGTACGATTATATTCGTTTAGAAGGACCTTCATACTGA 1917 0.4387 MPQLGVQLIIQDRHVVMDNGIARVTLSNPEGLVTVVQYNDIENLLEVLNEESNRGYWDLVWNSPTSTGTTGLFEVIRGTDFRVVVQNEEQVEISFSRTWDTSLDGKLVPLKIDKRFIMLRGSSGFYSYAIYEHLAEWPGFSLGETRIAFKLSKDKFHYMAMADNRQRNMPLPDDRLPPRGEVLAYPEAVRLVNPKEPELKGEVDDKYQYSCDNKDSKVHGWICRDPSIGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYAGEDLVPKFQAGEPWKKVFGPVFVYLNSAYDGDQDPVYELWEDAKTQMMNEVQSWPYTFPASEDFSKYNKRGNVSGRLLVRDRFISDKNIAGKGAYVGLAPPGDLGSWQRECKSYQFWTKADEDGYFSINNVRTGDYNLYAWVPGFIGDYKYNDVISITEGGVLNLDDLEYEPPRNGPTLWEIGIPDRTAAEFFVPDPSPRYVNKLYANHPDKFRQYGLWERYAELYPDKDLVYTVGISDYSKDWFFAQVTSRKKDNNTYEGTTWQIKFKLDSVNKNSDYKLRVALASATVSELQVRVNDQKAKPLFSSGLIGKDNSIARHGIHGLYWLFNVDVPAAQLVEGDNTIFLTQSRGNSPFQGIMYDYIRLEGPSY* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01145 638 CDD RGL4_M 336 435 IPR029413 -
Pte8g01145 638 Pfam Rhamnogalacturonate lyase family 9 203 IPR010325 -
Pte8g01145 638 CDD RGL4_N 11 295 - -
Pte8g01145 638 FunFam Rhamnogalacturonate lyase B 333 432 - -
Pte8g01145 638 SUPERFAMILY Galactose-binding domain-like 442 634 IPR008979 -
Pte8g01145 638 Pfam Polysaccharide lyase family 4, domain II 359 428 IPR029413 -
Pte8g01145 638 SUPERFAMILY Starch-binding domain-like 337 433 IPR013784 GO:0030246
Pte8g01145 638 Gene3D - 7 309 IPR014718 GO:0030246
Pte8g01145 638 Pfam Polysaccharide lyase family 4, domain III 445 633 IPR029411 -
Pte8g01145 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 637 - -
Pte8g01145 638 Gene3D - 334 433 - -
Pte8g01145 638 CDD RGL4_C 447 634 - -
Pte8g01145 638 SUPERFAMILY Galactose mutarotase-like 120 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pte8g01145 638 Gene3D - 443 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01145 Pte-Chr8 35475800 35480156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01145 1 637 Polysaccharide Lyase AT1G09890 70.219 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01145 K18195 - gmx:100793563 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g01145 8 35475800 35480156 Pte8g01145 8 35475800 35480156 RCT