Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01144 ATGTCATCCTCACAAGGGGTACGGCTGCATATTCAACCTCATCATGTGGTGATGGACAATGGTATACTCCAAGTCACGTTATCAAACCCAGATGGACTTGTGACTGGCATACGATATAATGGGGTTGACAATTTACTTGAGGTTCTTAACAAGGAGCACAACAGAGGGTACTGGGACCTCGTTTGGAGTGCACCAGGGAGCAAGGGAATCTTTGATGTGATCAGAGGAACATGTTTTAGAGTTATAGTTCAAAATGAGGAACAGCTTGAAGTTTCATTCTTAAGGACATGGGATCCTTCGCTTGAAGGGAAGTTTGTTCCTTTGAATATAGACAAAAGGTTTATAATGCTTCGTGGATCTTCAGGGTTCTATTCCTATGCCATTTATGACCATTTAAAGGATTGGCCTGGATTCGAACTTGGTGAAACAAGGATCACTTTCAAGCTTAGAAAGGACAAGTTCAATTACATGGCTATGGCAGACAACAGGCAAAGATTCATGCCTCTGCCTGATGATCGCTTGCCTGGAAGATGCAACAACTTGGCCTATCCAGAAGCTGTCCTGCTGGTTAATCCCAAGGAACCACTGCTCAGAGGAGAGGTAGATGACAAATACCAATACTCATGCAATAACAAAGATAATCGAGTTCATGGGTGGATATCTTTTAATCCGTCTGTAGGATTCTGGCAAATCACACCCAGTGATGAGTTCCGATCTGGTGGACCACTTAAACAGAATCTTACCTCACATGTTGGCCCTACTATGCTTGCTATTTTCCTCAGCGGACACTATGCAGGACAAGATCTTGTGCCAAAAATTACAGGCGGTGAACCTTGGAAAAAGGTTTTTGGTCCTGTGTTCATGTATTGTAATTCTGCACCGACTGGTGATGATCCATATTGGCTGTGGGAAGATGCTAAAATACAGATGACCTCTGAAGTCCAAAATTGGCCATACTGTTTCCCAGCATCAGAGGATTTTGCAAAACCAGACCAAAGGGGTAATGTGAGTGGGAGACTACTTGTCTTGGATAGGTATATTATTGATGAATGTCTACCTGCAAATGGTGCTTTCGTTGGTTTGGCTCCTCCAGGAGATGTAGGATCGTGGCAAAGAGAATGCAAGGACTATCAATTTTGGACAAGAGCAGATGACAATGGCTATTTTACCATAAACCACGTCCTTCCTGGCAACTATAATCTATTCGCATGGGTTCCTGGTTTCGTTGGGGACTTTAGAAATGATGCTTTAGTAACAATAACACCAGGTTGTTGTATTGAACTAGGTGAACTGGTATATGCACCTCCTAGAGATGGTCCAACTTTGTGGGAGATAGGTATCCCAGATAGAACTGCTGCAGAATTCTATGTCCCTGATCCAGATCCAACGTTTATTAACAAACTTTTTATCAACCATCCTGAGAGGTTTAGGCAGTATGGACTGTGGGACAGGTACTCGGAACTCTATCCTGATGGAGACTTAGTTTATACTGTTGGTGTTAGTGACTATACTAAGGACTGGTTCTACGCTCAGGTTACGAGGAAAAAAGAGAATAATACATATGTAGGCACAACTTGGCAAATCAAGTTTGACCTTCATGATGTGGATCATAGCAAAAACTACAAACTGAGGGTGGCAATTGCATCTGCTACTTTGGCTGAATTACAGATACGAGTCAATGATCCAAACACGCAGCGCCCTCTTTTCACCAGCGGACTAATTGGAAGAGACAATTCTATCGCGAGACATGGCATTCATGGCCTGTATTGGCTATACAATGTGAACGTACCAGGTGCAAAACTTGTCAGTGGGACGAACACTGTATTTTTTACACAACCAAGGTGTCAGAGTCCTTTCCAGGGCATCATGTATGACTATATTCGTTTAGAAGGTCCCTTCTAG 1902 0.4295 MSSSQGVRLHIQPHHVVMDNGILQVTLSNPDGLVTGIRYNGVDNLLEVLNKEHNRGYWDLVWSAPGSKGIFDVIRGTCFRVIVQNEEQLEVSFLRTWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYAIYDHLKDWPGFELGETRITFKLRKDKFNYMAMADNRQRFMPLPDDRLPGRCNNLAYPEAVLLVNPKEPLLRGEVDDKYQYSCNNKDNRVHGWISFNPSVGFWQITPSDEFRSGGPLKQNLTSHVGPTMLAIFLSGHYAGQDLVPKITGGEPWKKVFGPVFMYCNSAPTGDDPYWLWEDAKIQMTSEVQNWPYCFPASEDFAKPDQRGNVSGRLLVLDRYIIDECLPANGAFVGLAPPGDVGSWQRECKDYQFWTRADDNGYFTINHVLPGNYNLFAWVPGFVGDFRNDALVTITPGCCIELGELVYAPPRDGPTLWEIGIPDRTAAEFYVPDPDPTFINKLFINHPERFRQYGLWDRYSELYPDGDLVYTVGVSDYTKDWFYAQVTRKKENNTYVGTTWQIKFDLHDVDHSKNYKLRVAIASATLAELQIRVNDPNTQRPLFTSGLIGRDNSIARHGIHGLYWLYNVNVPGAKLVSGTNTVFFTQPRCQSPFQGIMYDYIRLEGPF* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01144 633 CDD RGL4_M 332 431 IPR029413 -
Pte8g01144 633 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Pte8g01144 633 Gene3D - 10 297 IPR014718 GO:0030246
Pte8g01144 633 Gene3D - 330 424 - -
Pte8g01144 633 SUPERFAMILY Starch-binding domain-like 332 427 IPR013784 GO:0030246
Pte8g01144 633 Pfam Rhamnogalacturonate lyase family 11 201 IPR010325 -
Pte8g01144 633 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 632 - -
Pte8g01144 633 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Pte8g01144 633 Gene3D - 439 630 - -
Pte8g01144 633 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Pte8g01144 633 FunFam Rhamnogalacturonate lyase B 329 428 - -
Pte8g01144 633 SUPERFAMILY Galactose mutarotase-like 16 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pte8g01144 633 CDD RGL4_N 15 300 - -
Pte8g01144 633 CDD RGL4_C 443 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01144 Pte-Chr8 35470383 35475130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01144 3 632 Polysaccharide Lyase AT1G09910 69.524 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01144 K18195 - qsa:O6P43_019544 1114.75