Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01138 ATGTCTTCACCACTGCTTGGTGTGGAGGAGGACGAGGGTCAGAAAAATGTCAGTTTGTTGACTTCCTCAGCCTCCACAGAAGATGGATGCCACAAAGGCACCGAACTGAAAGAAAGAAACTATATGCGATTATCTGTTTCTTCTTCTTGTGAGGACAGCTCAATTGTGTCTATTGTGTCACCTGGAAGCAAAAATAATCTAAATTTTAAGGCTACGGAACTGAGGCTTGGGCTTCCTGGATCTCAGTCTCCTGAAAGAGAAGCAGATCTCTCCCTAAGAAGCTCACCTCAACTTGATGAAAAGCCGTTATTTCCTTTACGTCCTTCAAATGATGATCACTATTTACCATCACCGAAAGCTGCTGTTTTGGGTAGCAAAAGGGGTTTTTCAGATGCTATGGATGGTTTCCGTGAGGCGAATTTTCTTGTTGGCCCAGAGGTTAATGTAATTTTGTCGCCTCGGCCTTCTCCAAACTTCATGGAACTCAAATCTGGTTCTGTGCTTGAGAACATTATCTCTCCACCGACCAAAGCTACAGAAGTAGCGCCAATAAAGGCATCACATGAGAGTGCTCCTGTCAATGATGAAACTAGAGGAAACCAGAATGGTCCTGCAAATTGTACTAGCAATACTCCTGCTAGCAAGGCACAGGTTATTGGCTGGCCTCCTATAGGATCATTTAGGAAGAATTCATTGGCTACAAAGACTGTAGATGAGGTGGATGGGAAAGCAGGGGCCAATGCTTTGTTTGTCAAGGTCAGTATGGATGGTGCTCCATATCTAAGGAAGGTAGATTTAAGCAGCTACTCTGCGTACCTGGAGCTTTCTTCTGCTCTTGAGAAGATGTTTAGTTGTTTCACCATAGCTCTAGGAAGAGAGACTATGTGTGAAAGCAAGCTGAAGGATCTGCTTCATGGTTCAGAATACGTTCTTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTTGGCGATGTTCCCTGGGAGATGTTCATTGATACCTGCAGGAGGATGAGAATCATGAAAAGCTCTGATGCTATTGGCTTAGCTCCCAGGGCAGTCGGAAAGAGTAAGAGCAAGACCTAA 1086 0.4429 MSSPLLGVEEDEGQKNVSLLTSSASTEDGCHKGTELKERNYMRLSVSSSCEDSSIVSIVSPGSKNNLNFKATELRLGLPGSQSPEREADLSLRSSPQLDEKPLFPLRPSNDDHYLPSPKAAVLGSKRGFSDAMDGFREANFLVGPEVNVILSPRPSPNFMELKSGSVLENIISPPTKATEVAPIKASHESAPVNDETRGNQNGPANCTSNTPASKAQVIGWPPIGSFRKNSLATKTVDEVDGKAGANALFVKVSMDGAPYLRKVDLSSYSAYLELSSALEKMFSCFTIALGRETMCESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRMRIMKSSDAIGLAPRAVGKSKSKT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01138 361 MobiDBLite consensus disorder prediction 15 29 - -
Pte8g01138 361 MobiDBLite consensus disorder prediction 193 215 - -
Pte8g01138 361 Gene3D - 243 355 - -
Pte8g01138 361 MobiDBLite consensus disorder prediction 1 33 - -
Pte8g01138 361 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 348 IPR003311 GO:0005634|GO:0006355
Pte8g01138 361 SUPERFAMILY CAD & PB1 domains 246 342 - -
Pte8g01138 361 MobiDBLite consensus disorder prediction 179 215 - -
Pte8g01138 361 MobiDBLite consensus disorder prediction 77 101 - -
Pte8g01138 361 FunFam Auxin-responsive protein 243 353 - -
Pte8g01138 361 Pfam AUX/IAA family 72 352 IPR033389 -
Pte8g01138 361 ProSiteProfiles PB1 domain profile. 248 343 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01138 Pte-Chr8 35428263 35432185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01138 250 343 B3 DNA Binding Superfamily AT1G19220 34.043 4.77e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte8g01138 AUX_IAA 7.1e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01138 K14484 - qsa:O6P43_015419 482.256